Locus 6209

Sequence ID X_DroMel_CAF1
Location 15,808,803 – 15,808,923
Length 120
Max. P 0.815294
window10115

overview

Window 5

Location 15,808,803 – 15,808,923
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 75.97
Mean single sequence MFE -22.75
Consensus MFE -14.26
Energy contribution -14.58
Covariance contribution 0.31
Combinations/Pair 1.21
Mean z-score -1.83
Structure conservation index 0.63
SVM decision value 0.66
SVM RNA-class probability 0.815294
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15808803 120 - 22224390
CUCAAAAGUCUAUAUUAUCUCAAAACCACUUUAAGUGUCCAAAAGCAUGCUUAGAAAGCAAAGUUUGCUCUUUUGCACACAACAAUGUAGCACACUUUUCUGCGCAUUUACUCAAGUAAG
...........................((((...((((.((((((((.((((........)))).))))..)))).))))...(((((.(((........)))))))).....))))... ( -18.90)
>DroSec_CAF1 10717 116 - 1
CCCAUAAAUCUCUAUUAUCUCAAAACCACUUUAAGGGUCCAAAAGCAUGCUUAGAA----AAGCUUGUUCUUUUGAACACAACAAGGAAGCAGACUUUUCUGCGCUUUUACUUCAACAAG
(((.((((.....................)))).)))...((((((..((((....----)))).(((((....)))))..........(((((....)))))))))))........... ( -21.10)
>DroSim_CAF1 10599 120 - 1
CCCAUAAAUCUCUAUUAUCUCAAAACCACUUUAAGUGUCUAAAAGCAUGCUUAGAAAGCAAAGCUUGUUCUUUUGAACACAACAAGGAAGCAGACUUUUCUGCGCUUUUACUUCAACAAG
..........................(((.....)))..(((((((.((((.....)))).....(((((....)))))..........(((((....)))))))))))).......... ( -21.50)
>DroYak_CAF1 9957 109 - 1
CAUAGAAAACUCUA------CAGGAC-----GCAGUGUCCAGAAGCAUGCCCAGAAAAGUAGGCUACUUCUUUUGCACACAAAAACGUAGCAUACUUUUCCGCGCAUUUGCCUAAUCCUC
..((((....))))------..((((-----.....))))....((((((.(.((((((((.(((((...(((((....)))))..))))).)))))))).).)))..)))......... ( -29.50)
>consensus
CCCAUAAAUCUCUAUUAUCUCAAAACCACUUUAAGUGUCCAAAAGCAUGCUUAGAAAGCAAAGCUUGUUCUUUUGAACACAACAAGGAAGCAGACUUUUCUGCGCAUUUACUUAAACAAG
..................................((((.((((((...((((........)))).....)))))).)))).........(((((....)))))................. (-14.26 = -14.58 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:17 2006