Locus 6207

Sequence ID X_DroMel_CAF1
Location 15,805,403 – 15,805,497
Length 94
Max. P 0.500000
window10110

overview

Window 0

Location 15,805,403 – 15,805,497
Length 94
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 73.88
Mean single sequence MFE -18.85
Consensus MFE -11.57
Energy contribution -11.81
Covariance contribution 0.24
Combinations/Pair 1.06
Mean z-score -1.44
Structure conservation index 0.61
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15805403 94 - 22224390
CAUCUAACCACCCG------------------------C-AGUUGUGCACGGCAAUUCAAAUCUCAACGUGCCCCAGUGCUUU-CGAUUGUUUUUAAACAAUUAAAUCCACCGCAUAAUC
..............------------------------.-.(((((((..((((...............))))...(((..((-..((((((....))))))..))..))).))))))). ( -18.56)
>DroSec_CAF1 7178 110 - 1
CAUCUACCUACCCGU------ACCCAUACCCAAACCCAU-AGUUGUGCACGGCCA--GAAAUCUCAACGUGCCGCAGUGCUUU-CGAUUGUUUUUAAACAAUUAAAUCCACCGCAUAAUC
...............------..................-.((((((((((...(--(....))...))))).((.(((..((-..((((((....))))))..))..))).))))))). ( -20.20)
>DroSim_CAF1 6156 116 - 1
CAUCUACCUACCCGUACCCGUACCCAUACCCAUACCCAU-AGUUGUGCACGGCCA--GAAAUCUCAACGUGCCGCAGUGCUUU-CGAUUGUUUUUAAACAAUUAAAUCCACCGCAUAAUC
.............(((....)))................-.((((((((((...(--(....))...))))).((.(((..((-..((((((....))))))..))..))).))))))). ( -20.70)
>DroEre_CAF1 5856 88 - 1
CACCUA---------------------------ACCAAC--GUUGUGCACGGCCA--GAAAUCGCAGCGUGCUCGUCUGCCUU-CUAUUGUUUUGAAACAAUUAAAUCCACCGCAUAAUC
......---------------------------......--(((((((..(((.(--((....((.....))...))))))..-..((((((....))))))..........))))))). ( -17.50)
>DroYak_CAF1 6214 93 - 1
CACCUACC-------------------------ACCGAUGUGUUGUGCACGGCCA--GGAAUCGCAACGUGCCCGUCUGUAUUGCCAUUGUUUUGAAACAAUUAAAUCCACCGCAUAAUC
........-------------------------........(((((((..(((((--((....((.....))...))))....)))((((((....))))))..........))))))). ( -17.30)
>consensus
CAUCUACC_ACCCG___________________ACCCAU_AGUUGUGCACGGCCA__GAAAUCUCAACGUGCCCCAGUGCUUU_CGAUUGUUUUUAAACAAUUAAAUCCACCGCAUAAUC
.........................................(((((((..(((.................)))............(((((((....))))))).........))))))). (-11.57 = -11.81 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:12 2006