Locus 6206

Sequence ID X_DroMel_CAF1
Location 15,802,622 – 15,802,730
Length 108
Max. P 0.996287
window10109

overview

Window 9

Location 15,802,622 – 15,802,730
Length 108
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 96.67
Mean single sequence MFE -22.86
Consensus MFE -22.82
Energy contribution -22.42
Covariance contribution -0.40
Combinations/Pair 1.07
Mean z-score -1.73
Structure conservation index 1.00
SVM decision value 2.68
SVM RNA-class probability 0.996287
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15802622 108 - 22224390
GCAUAAGCUUAUGUUUGAAACAAGUAAUUUGAAACUGAUUGCUUGCUGGGGCAAAAGAGAAAUCACAGUAAUUGCAGUAAAAGCAAACAUUUAAUUUGCACGAACGAA
((....))...((((((...(((((((((.......))))))))).....(((((.((....)).......((((.......))))........))))).)))))).. ( -22.40)
>DroSec_CAF1 3394 108 - 1
GCAUAAGCUUAUGUUUGAAACAAGUAAUUUGAAACUGAUUGCUCGCUGGGGCAAAAGAGAAAUCACAGUAAUUGCAGUAAAAGCAAACAUUUAAUUUGCACGAACGAA
((....))...((((((......((((((....((((.((((((....))))))..((....)).)))))))))).......(((((.......))))).)))))).. ( -24.20)
>DroSim_CAF1 3461 108 - 1
GCAUAAGCUUAUGUUUGAAACAAGUAAUUUGAAACUGAUUGCUCGCUGGGGCAAAAGAGAAAUCACAGUAAUUGCAGUAAAAGCAAACAUUUAAUUUGCACGAACGAA
((....))...((((((......((((((....((((.((((((....))))))..((....)).)))))))))).......(((((.......))))).)))))).. ( -24.20)
>DroEre_CAF1 3274 108 - 1
GCAUAAGCUCGUGUUUGAAACAAGUAAUUUAAAACUGAUUGCUCGCUGGGGCAAAGGAAAAAUCACAGUAAUUGCAGUAAAAGCAAACAUUUAAUUUGCACGAACGAA
((....))...((((((......((((((....((((.((((((....))))))..((....)).)))))))))).......(((((.......))))).)))))).. ( -21.10)
>DroYak_CAF1 3433 108 - 1
GCAUAAGCUUGUGUUUGAAACAAGUAAUUUGAAACUGAUUGCUCGCCGGGGCAAAAGAAAAAUCACAGUAAUUGCAGUAAGAGCAAACAUUUAAUUUGCACGAACGAA
(((...((((((.......))))))........((((.((((((....))))))..((....)).))))...))).((..(.(((((.......))))).)..))... ( -22.40)
>consensus
GCAUAAGCUUAUGUUUGAAACAAGUAAUUUGAAACUGAUUGCUCGCUGGGGCAAAAGAGAAAUCACAGUAAUUGCAGUAAAAGCAAACAUUUAAUUUGCACGAACGAA
(((.......(((((((......((((((....((((.((((((....))))))..((....)).))))))))))........)))))))......)))......... (-22.82 = -22.42 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:11 2006