Locus 6205

Sequence ID X_DroMel_CAF1
Location 15,802,082 – 15,802,188
Length 106
Max. P 0.742408
window10108

overview

Window 8

Location 15,802,082 – 15,802,188
Length 106
Sequences 3
Columns 118
Reading direction reverse
Mean pairwise identity 78.55
Mean single sequence MFE -24.63
Consensus MFE -19.76
Energy contribution -19.43
Covariance contribution -0.33
Combinations/Pair 1.09
Mean z-score -1.37
Structure conservation index 0.80
SVM decision value 0.45
SVM RNA-class probability 0.742408
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15802082 106 - 22224390
AAAUUAGUGUUGCUUUUUGGAAUCU------------UGUUUGAAUUUUUUUUAAUUGAUUCUUAAUUCGAUUGUUGCAACUACUCGGCGACAUUCGAAUCUGCAUUACCAUUAACAA
...((((((.(((.....((((((.------------...(((((.....)))))..))))))..((((((.((((((.........)))))).))))))..)))....))))))... ( -24.70)
>DroSec_CAF1 2865 109 - 1
AAAUGAGUGUUAUUCGUUGGCAACUUGGAGGCCUAAUUGUUUGAAUUAU-UUAAACUGAUUCGUAAUUCGAUUGUUGCAACUACUCGGCGACAUUCGGAAAUGCAUUCCC--------
....((((((((.....)))).))))((((((..........((((((.-......))))))....(((((.((((((.........)))))).)))))...)).)))).-------- ( -24.00)
>DroSim_CAF1 2903 109 - 1
AAAUGAGUGUUGUUCGUUGUCAACUUGGAGGCCUAAUUGUUUGAAUUAU-UUAAACUGAUUCGUAAUUCGAUUGUUGCAACUACUCGGCGACAUUCGGAAAUGCAUUCCC--------
....((((((((((.((((.(((((((((...(.((((((((((.....-)))))).)))).)...)))))..)))))))).....))))))))))((((.....)))).-------- ( -25.20)
>consensus
AAAUGAGUGUUGUUCGUUGGCAACUUGGAGGCCUAAUUGUUUGAAUUAU_UUAAACUGAUUCGUAAUUCGAUUGUUGCAACUACUCGGCGACAUUCGGAAAUGCAUUCCC________
....((((((................................((((((........))))))....(((((.((((((.........)))))).)))))...)))))).......... (-19.76 = -19.43 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:10 2006