Locus 6204

Sequence ID X_DroMel_CAF1
Location 15,800,159 – 15,800,278
Length 119
Max. P 0.913937
window10107

overview

Window 7

Location 15,800,159 – 15,800,278
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 76.32
Mean single sequence MFE -23.56
Consensus MFE -13.52
Energy contribution -13.76
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -2.02
Structure conservation index 0.57
SVM decision value 1.09
SVM RNA-class probability 0.913937
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15800159 119 + 22224390
UUUUUUUUUAUUUUUGCGCAGCAAAUAAUUUCGUUUGAAAUGAAUGAAAUAAUGUUGCAAUGAUUUAAUUAAUCUGCUCA-AACAUUGUUUUAUCGCAGCGGCCAGAGGACCAGAGAGAG
(((((((...((((((.((.((.....(((((....)))))((.(((((((((((((((..((((.....)))))))...-))))))))))))))...)).))))))))...))))))). ( -25.40)
>DroSec_CAF1 956 97 + 1
UUUUUUUUC---GUUGCGCAGCAAAUAAUUUCGUUUGAAAUGAAUAAAAUAAUGUUGCAAUGAUUUAAUUAAUCUGCUCA-AACAUUGUUUUAUCGCAGCG-------------------
........(---((((((((.(((((......)))))...)).((((((((((((((((..((((.....)))))))...-))))))))))))))))))))------------------- ( -24.50)
>DroSim_CAF1 955 97 + 1
UUUUUUGUU---GUUGCGCAGCAAAUAAUUUCGUUUGAAAUGAAUGAAAUAAUGUUGCAAUGAUUUAAUUAAUCUGCUCA-AACAUUGUUUUAUCGCAGCG-------------------
.........---((((((((.(((((......)))))...)).((((((((((((((((..((((.....)))))))...-))))))))))))))))))).------------------- ( -23.80)
>DroEre_CAF1 955 90 + 1
UUGUUUU----------GCUGAGAACAAUUUCGU-UGCAAUGAAUGAAAUAAUGUUGCAAUGAUUUAAUUAAUCCCCCUA-AACAUUGUUCUAUGGCUGUGG------------------
.......----------((((((((((((.((((-((((((............)))))))))).................-...)))))))).)))).....------------------ ( -18.60)
>DroYak_CAF1 956 106 + 1
UUGUUUU----------GCUGAGGAUAAUUUCGUUUGAAAUGAAUGAAAUAAUGUUGCAAUGAUUUAAUUAAUCUCCUUAAAACAUUGUUUUAUCGCUGUGGCA--GCGACCAAAGCG--
.......----------(((..((...(((((....)))))...((((((((((((.....((((.....)))).......))))))))))))((((((...))--))))))..))).-- ( -25.50)
>consensus
UUUUUUUU_____UUGCGCAGCAAAUAAUUUCGUUUGAAAUGAAUGAAAUAAUGUUGCAAUGAUUUAAUUAAUCUGCUCA_AACAUUGUUUUAUCGCAGCGG__________________
.................((........(((((....)))))..(((((((((((((.....((((.....)))).......))))))))))))).))....................... (-13.52 = -13.76 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:10 2006