Locus 6202

Sequence ID X_DroMel_CAF1
Location 15,797,497 – 15,797,603
Length 106
Max. P 0.509232
window10104

overview

Window 4

Location 15,797,497 – 15,797,603
Length 106
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 78.80
Mean single sequence MFE -31.93
Consensus MFE -23.55
Energy contribution -24.17
Covariance contribution 0.61
Combinations/Pair 1.25
Mean z-score -0.94
Structure conservation index 0.74
SVM decision value -0.05
SVM RNA-class probability 0.509232
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15797497 106 - 22224390
GAUACCAUUUAUACCAUUUUUUGCCGUAGGCGAGGAGUGCUUUUGCCGCGACUGGCACGGUUGCAUCAUGGCCCAGUCAAUUGUCGGCCAGGAGAAUGUCCAGCCA
((((..........(((((((((((...)))))))))))((((((((((((.((((..((((.......))))..)))).))).))).))))))..))))...... ( -31.10)
>DroSec_CAF1 1356 105 - 1
UUUACCAUUUAUACCAUUU-UGGCCGUAGGCGAGGAGUGCUUUUGCCGUGACUGGCAUGGUUGCAUCAUGGCUCAGUCGAUUGUCGGCCAGGAGAAUGUCCAGCCA
.....(((((......(((-((((((..(((((((.....))))))).(((((((((((((...))))).)).)))))).....))))))))))))))........ ( -33.00)
>DroEre_CAF1 1297 100 - 1
-UUGCCAUU----GCAUUU-UUGCCGUAGGCGAGGAGUGCUUCUGCCGUGACUGGCACGGUUGCAUCAUGGCCCAGUCGAUUGUGGGCCAGGAGAAUGUCCAGCCA
-(((((((.----(((...-.))).)).)))))(((.(((....((((((.....)))))).)))((.(((((((........))))))).)).....)))..... ( -38.20)
>DroWil_CAF1 1174 88 - 1
-----------------AU-GUCCUGCAGGCGAGGAAUGCUUUUGCCGAGACUGGCAUGGUUGCAUUAUGGCACAGUCAAUUGUUGGCCAAGAGAAUGUGCAGCCA
-----------------((-(((...(.(((((((.....)))))))..)...)))))((((((((..((((.(((.(....)))))))).......)))))))). ( -28.30)
>DroYak_CAF1 1300 90 - 1
---------------CCCU-UUGCCGUAGGCGAGGAGUGCUUUUGCCGUGACUGGCAUGGUUGCAUCAUGGCCCAGUCGAUUGUGGGCCAGGAGAAUGUCCAGCCA
---------------....-.((((((.(((((((.....)))))))...)).))))((((((..((.(((((((........))))))).)).......)))))) ( -33.40)
>DroAna_CAF1 89363 86 - 1
----------------UUU-UU---GCAGGCGAAGAAUGCUUUUGCCGUGAUUGGCAUGGUUGUAUUAUGGCUCAGUCAAUUGUCGGCCAAGAGAGUGUGCAGCCU
----------------...-..---..((((.....((((((((((((((((((((.((((..(...)..)).)))))))))).))))...))))))))...)))) ( -27.60)
>consensus
_______________AUUU_UUGCCGUAGGCGAGGAGUGCUUUUGCCGUGACUGGCAUGGUUGCAUCAUGGCCCAGUCAAUUGUCGGCCAGGAGAAUGUCCAGCCA
............................(((..(((...((((((((((((((((((((((...))))))..))))))).....))).))))))....))).))). (-23.55 = -24.17 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:07 2006