Locus 6201

Sequence ID	X_DroMel_CAF1
Location	15,793,133 – 15,793,226
Length	93
Max. P	0.531514

overview

Window 3

Location	15,793,133 – 15,793,226
Length	93
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	91.18
Mean single sequence MFE	-15.60
Consensus MFE	-12.14
Energy contribution	-11.46
Covariance contribution	-0.68
Combinations/Pair	1.24
Mean z-score	-1.45
Structure conservation index	0.78
SVM decision value	-0.00
SVM RNA-class probability	0.531514
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15793133 93 - 22224390
AAAAUAACGUUUAUAAAUAAUAUGCGAAAUGUUGGUUGUUAGUGGUAAUUAGCACAAAUCGAUUACCAUUGUCAUAGAAAAGCGAACAAAAAG
.......(((((.....((((((.....))))))..((.((((((((((..(......)..)))))))))).)).....)))))......... ( -16.10)
>DroSec_CAF1 11470 93 - 1
AAAAUAACGUUUAUAAAUAAUAUGCGAAAUGUUGGUUGUUAGUGGUAAUUAGCACAAAUCGAUUACCAUUGUCAUAGAAAAGCGAACAAAAAG
.......(((((.....((((((.....))))))..((.((((((((((..(......)..)))))))))).)).....)))))......... ( -16.10)
>DroSim_CAF1 6954 89 - 1
---AUAACGUUUAUAAAUAAUAUGCGAAAUGUUGGUUGUUAGUGGUAAUUAGCACAAAUCGAUUACCAUUGUCAUAGA-AAGCGAACAAAAAG
---....(((((.....((((((.....))))))..((.((((((((((..(......)..)))))))))).))....-)))))......... ( -16.10)
>DroEre_CAF1 10916 93 - 1
AAAAUAUCGUAUAUAAAUUAAAUGUGAAAUGUUCGUUAUUAGUGGUAAUUAGCACAAAUCGAUUACCAUUGUCAUAGAAAGCUGAACAAAAAG
......................(((......(((.....((((((((((..(......)..)))))))))).....)))......)))..... ( -14.00)
>DroYak_CAF1 5215 93 - 1
AAAGAAACAUUUAUGAAUAAUAUGUGAAAUGCUCGUUAUUAGUGGUAAUUAGCACAAAUCGAUUACCAUUGUCAUAGAAAAGCGAACAAAAAG
.........((((((((((((..((.....))..)))))((((((((((..(......)..)))))))))))))))))............... ( -15.70)
>consensus
AAAAUAACGUUUAUAAAUAAUAUGCGAAAUGUUGGUUGUUAGUGGUAAUUAGCACAAAUCGAUUACCAUUGUCAUAGAAAAGCGAACAAAAAG
.......(((.(((.....))).)))...((((..((((((((((((((..(......)..))))))))))..))))...))))......... (-12.14 = -11.46 +  -0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:06 2006