Locus 6200

Sequence ID X_DroMel_CAF1
Location 15,792,393 – 15,792,513
Length 120
Max. P 0.920449
window10102

overview

Window 2

Location 15,792,393 – 15,792,513
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 99.28
Mean single sequence MFE -29.50
Consensus MFE -28.75
Energy contribution -28.70
Covariance contribution -0.05
Combinations/Pair 1.03
Mean z-score -1.08
Structure conservation index 0.97
SVM decision value 1.13
SVM RNA-class probability 0.920449
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15792393 120 - 22224390
UCAAAUACAGUGUUCCUAGUCGGUGUUCUAAUGUCAGUUGUAGGGUUCGUUUUUAUAACAUUCACCUUGAUGGCAUUGUGCUACAGGUCAGUUGUAGUACAUAGAAACUUCUCCCUGUGU
....((((((....((.....))..(((((((((((....((((((..(((.....)))....)))))).))))))((((((((((.....)))))))))))))))........)))))) ( -29.50)
>DroPse_CAF1 28019 120 - 1
UCAAAUACAGUGUUCCUAGUCGGUGUUCUAAUGUCAGUUGUAGGGUUCGUUUUUAUAACAUUCACCUUAAUGGCAUUGUGCUACAGGUCAGUUGUAGUACAUAGAAACUUCUCCCUGUGU
....((((((....((.....))..(((((((((((....((((((..(((.....)))....)))))).))))))((((((((((.....)))))))))))))))........)))))) ( -29.80)
>DroWil_CAF1 12011 120 - 1
UCAAAUACAGUGUUCCUAGUCGGUGUUCUAAUGUCAGUUGUAGGGUUCGUUUUUAUAACAUUCACAUUGAUGGCAUUGUGCUACAGGUCAGUUGUAGUACAUAGAAACUUCUCCCUGUGU
....((((((....((.....))..((((((((((((((((((((.....)))))))))..((.....))))))))((((((((((.....)))))))))))))))........)))))) ( -28.90)
>DroYak_CAF1 4466 120 - 1
UCAAAUACAGUGUUCCUAGUCGGUGUUCUAAUGUCAGUUGUAGGGUUCGUUUUUAUAACAUUCACCUUGAUGGCAUUGUGCUACAGGUCAGUUGUAGUACAUAGAAACUUCUCCCUGUGU
....((((((....((.....))..(((((((((((....((((((..(((.....)))....)))))).))))))((((((((((.....)))))))))))))))........)))))) ( -29.50)
>DroMoj_CAF1 12057 120 - 1
UCAAAUACAGUGUUCCUAGUCGGUGUUCUAAUGUCAGUUGUAGGGUUCGUUUUUAUAACAUUCACCUUGAUGGCAUUGUGCUACAGGUCAGUUGUAGUACAUAGAAACUUCUCCCUGUGU
....((((((....((.....))..(((((((((((....((((((..(((.....)))....)))))).))))))((((((((((.....)))))))))))))))........)))))) ( -29.50)
>DroPer_CAF1 91815 120 - 1
UCAAAUACAGUGUUCCUAGUCGGUGUUCUAAUGUCAGUUGUAGGGUUCGUUUUUAUAACAUUCACCUUAAUGGCAUUGUGCUACAGGUCAGUUGUAGUACAUAGAAACUUCUCCCUGUGU
....((((((....((.....))..(((((((((((....((((((..(((.....)))....)))))).))))))((((((((((.....)))))))))))))))........)))))) ( -29.80)
>consensus
UCAAAUACAGUGUUCCUAGUCGGUGUUCUAAUGUCAGUUGUAGGGUUCGUUUUUAUAACAUUCACCUUGAUGGCAUUGUGCUACAGGUCAGUUGUAGUACAUAGAAACUUCUCCCUGUGU
....((((((....((.....))..(((((((((((....((((((..(((.....)))....)))))).))))))((((((((((.....)))))))))))))))........)))))) (-28.75 = -28.70 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:05 2006