Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,720,505 – 1,720,616 |
Length | 111 |
Max. P | 0.756864 |
Location | 1,720,505 – 1,720,616 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.96 |
Mean single sequence MFE | -43.50 |
Consensus MFE | -16.49 |
Energy contribution | -16.17 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.46 |
Mean z-score | -2.32 |
Structure conservation index | 0.38 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.756864 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1720505 111 + 22224390 UGAGCAGCUUUUCUGCGUGGGUGAGAAACUGCUCAUCCUCGGAUGCAUCAUCCACAGACAGCAUGGAUUUUUGGUGG------CUCUGAGGGUCCUG---CUGCUGGUGCUCUUGGUGCU .(((((((......))(.(((((((......))))))).)(((((...))))).(((.(((((.(((((((..(...------..)..)))))))))---)))))).)))))........ ( -46.10) >DroSec_CAF1 183 117 + 1 UGAGGAGCUUUUCUGCGUGGGUGAGGAAUUGCUCAUCCUCGGAUGCAUCAUCCACCGACAGCAUGGAUUUUUGGUGGAGUGCCUUCUGAGGCUCCUG---CUGUUGGUGCUCUUGGUGCU .(((((((......)).((((..(....)..)))))))))....((((((..(((((((((((.(((.(((..(.((....))..)..))).)))))---)))))))))....)))))). ( -50.80) >DroEre_CAF1 165 117 + 1 UGAGCAGCUUUUCUGCGUGGGUGAGAAACUGCUCAUCCUCGGAAGCACUAUCCACAGACACCAUGGAUUUUUGGUGGGCUGCUUUCUGACACUCUUG---CUGAUGGUGCUCUUGGUGUU .((((((((..((((.(.(((((((......))))))).)(((.......))).))))(((((........)))))))))))))...((((((...(---(.......))....)))))) ( -41.30) >DroYak_CAF1 288 117 + 1 UGAGCAGUUUUUCUGCGUGGGUGAGAAACUGCUCAUCCUCGGAAGCAUCAUCCACAGACAGAAUGGAUUUUUGGUGGACUGCCUUCUGGGGCUCCUG---CUGAUGGUGGUCGUGGUGCU (((((((((((((.((....)))))))))))))))((....))((((((((((((...(((...(((.(((..(.((....))..)..))).)))..---)))...))))..)))))))) ( -46.20) >DroAna_CAF1 198 113 + 1 UCAGGAGCUUUUCUGCUUGGGUGAGAAACUGCUCGUCCUCGGAGGCAUCCCCUGUAGAGAGCAUCGAUUUUUGGUGA------UCCUGAUGCUCCCUCUCCUGCUGCUGCUUUUC-CGCG .((((((....(((((..((..(((......)))..))..(((....)))...)))))(((((((((((......))------))..)))))))...)))))).....((.....-.)). ( -36.10) >DroPer_CAF1 207 117 + 1 UCAAGAGCUUCUCGGCCUGUGUGAGGAAUUGCUCGUCCUCGGAAGCAUCGUUGGUUGACAGCAUCGACUUUUGAUGCUGAUGAUCUUGUGGCUGUUC---CUGCUGCUGCUGUUCCUGAU (((.((((....((((....((.((((((.(((((...(((..(((((((..((((((.....))))))..)))))))..)))...)).))).))))---)))).))))..)))).))). ( -40.50) >consensus UGAGCAGCUUUUCUGCGUGGGUGAGAAACUGCUCAUCCUCGGAAGCAUCAUCCACAGACAGCAUGGAUUUUUGGUGG__UGC_UUCUGAGGCUCCUG___CUGCUGGUGCUCUUGGUGCU ..((.((((((((((...(((((((......))))))).))))..(((((((((.........)))))....))))...........)))))).))........................ (-16.49 = -16.17 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:36 2006