| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,790,014 – 15,790,120 |
| Length | 106 |
| Max. P | 0.622771 |
| Location | 15,790,014 – 15,790,120 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 92.45 |
| Mean single sequence MFE | -31.13 |
| Consensus MFE | -26.09 |
| Energy contribution | -27.53 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.622771 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15790014 106 + 22224390 CAAUGCAUUGCGACAGUAGUAAGAUAUGGGUGUAUUCGGUUUCCAUAUCGGUAUUGGGCUGGGCCACAGUAUCUGUAUCUGUAUCUGUAUCUGUUUCUGUUGCAUC ........((((((((.....(((((((((((.....((...))((((.((((((((((...))).))))))).))))...)))))))))))....)))))))).. ( -33.80) >DroSec_CAF1 8619 100 + 1 AAAUGCAUUGCGACAGUAGUAAGAUAUGGGUGUAUUCGGUUUCCAUAUCGGUUGUGGGCUGGGCCACAGUAUCUGUAU------CUGUAUCUGUUUCUGUUGUAUC ........((((((((.....((((((((((......((((((((((.....))))))...))))((((...))))))------))))))))....)))))))).. ( -30.00) >DroSim_CAF1 1775 105 + 1 CAAUGCAUUGCGACAGUAGUAAGAUAUGGGUGUAUUCA-UUUCCAUAUCGGUUGUGGGCUGGGCCACAGUAUCUGUAUCUGUAUCUGUAUCUGUUUCUGUUGUAUC ........((((((((.....(((((((((((......-...(((((.....)))))((((.....))))...........)))))))))))....)))))))).. ( -29.60) >consensus CAAUGCAUUGCGACAGUAGUAAGAUAUGGGUGUAUUCGGUUUCCAUAUCGGUUGUGGGCUGGGCCACAGUAUCUGUAUCUGUAUCUGUAUCUGUUUCUGUUGUAUC ........((((((((.....(((((((((((..........(((((.....)))))((((.....))))...........)))))))))))....)))))))).. (-26.09 = -27.53 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:04 2006