Locus 6198

Sequence ID X_DroMel_CAF1
Location 15,789,793 – 15,789,887
Length 94
Max. P 0.962543
window10100

overview

Window 0

Location 15,789,793 – 15,789,887
Length 94
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 87.16
Mean single sequence MFE -24.22
Consensus MFE -19.94
Energy contribution -19.82
Covariance contribution -0.12
Combinations/Pair 1.10
Mean z-score -2.13
Structure conservation index 0.82
SVM decision value 1.54
SVM RNA-class probability 0.962543
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15789793 94 - 22224390
UGAGAAUGU------------------AUGUUUUGAGAAUUUGCCGUGCGAAAAACGUCGGCGGCUUUUCAGUACAUG--AACAAAGCAAUUACAUUUCAAUUUCAAUUACAAU
(((((.(((------------------((((((((.......(((((.(((......))))))))..((((.....))--)))))))))..))))))))).............. ( -23.20)
>DroSec_CAF1 8398 94 - 1
UGAGAAUGU------------------AUGUUUUGAGAACUUGCCGUGCGAAGAACGUCGGCGGCUUUUCAGUACAUG--AACAAAGCAAUUACAUUUGAAUUUCAAUUACAAU
(((((...(------------------((((.(((((((.((((((.(((.....))))))))).))))))).)))))--..((((.........))))..)))))........ ( -23.40)
>DroSim_CAF1 1554 94 - 1
UGAGAAUGU------------------AUGUUUUGAGAACUUGCCGUGCGAAGAACGUCGGCGGCUUUUCAGUACAUG--AACAAAGCAAUUACAUUUGAGUUUCAAUUACAAU
(((((...(------------------((((.(((((((.((((((.(((.....))))))))).))))))).)))))--..((((.........))))..)))))........ ( -23.30)
>DroEre_CAF1 7460 94 - 1
UGAGAAUGU------------------AUGUUUUGAGAACUUGCCGUGCGAAGAACGGCGGUGGCUUUUCAGUACAUG--AACAAAUCAAAUACAUUUGAAUUUCAAUUACAUU
(((((...(------------------((((.(((((((.(..((((.((.....))))))..).))))))).)))))--......(((((....))))).)))))........ ( -23.40)
>DroYak_CAF1 1929 114 - 1
UGAGAAUGUAACAUAUAACAAUCAUAUAUGUUUUGAGAACUUGCCGUGCGAAGAACGCCGGUGACUUUUCAGUACAUGAGAACAAAUCAAAUACAUUUGAAUUUCAAUUACAUU
....(((((((...............(((((.(((((((.(..(((.(((.....))))))..).))))))).))))).(((....(((((....)))))..)))..))))))) ( -27.80)
>consensus
UGAGAAUGU__________________AUGUUUUGAGAACUUGCCGUGCGAAGAACGUCGGCGGCUUUUCAGUACAUG__AACAAAGCAAUUACAUUUGAAUUUCAAUUACAAU
(((((......................((((.(((((((.((((((.(((.....))))))))).))))))).)))).....((((.........))))..)))))........ (-19.94 = -19.82 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:03 2006