| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,785,636 – 15,785,756 |
| Length | 120 |
| Max. P | 0.882438 |
| Location | 15,785,636 – 15,785,756 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.22 |
| Mean single sequence MFE | -55.37 |
| Consensus MFE | -51.59 |
| Energy contribution | -51.93 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.882438 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15785636 120 - 22224390 UGGCGUCGACGAGCGGCGGUGCGGCUGCCUCCGAGGUGGAGCGGACGCUUAAAUCCCUUAAUGGGUAUCAUGAGGACAUUUUGGAGGCGCUACGGAAUGCGGCCACGCAUCGGGGAACCG ...(((((.....)))))(((.((((((((((((((((((((....)))).....(((((.((.....))))))).))))))))))))((........)))))).)))..(((....))) ( -51.20) >DroSim_CAF1 17370 120 - 1 UGGCGUCGACGAGCGGCGGUGCGGCUGCCUCCGAGGUGGAGCGGACGCUCAAGUCACUCAAUGGCUAUCAUGAGGACAUCUUGGAGGCGCUGCGGAAUGCGGCCACGCACCGGGGAACCG ....((((.....))))((((((...(((((((((((.((((....))))..(((.((((.((.....))))))))))))))))))))(((((.....)))))..))))))((....)). ( -60.60) >DroYak_CAF1 15076 120 - 1 UGGCGUCGACGAGCGGCGGUGCGGCUGCCUCCGAGGUGGAGCGCACAUUGAAAUCCCUUAAUGGUUAUCAUGAGGACAUCUUGGAGGCGCUGCGAAAUGCGGCAACGCACCGGGGAACCG ....((((.....))))((((((...((((((((((((((...(.....)...))(((((.((.....))))))).))))))))))))(((((.....)))))..))))))((....)). ( -54.30) >consensus UGGCGUCGACGAGCGGCGGUGCGGCUGCCUCCGAGGUGGAGCGGACGCUCAAAUCCCUUAAUGGCUAUCAUGAGGACAUCUUGGAGGCGCUGCGGAAUGCGGCCACGCACCGGGGAACCG ....((((.....))))((((((...((((((((((((((((....)))).....(((((.((.....))))))).))))))))))))(((((.....)))))..))))))((....)). (-51.59 = -51.93 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:02 2006