Locus 6196

Sequence ID X_DroMel_CAF1
Location 15,785,420 – 15,785,516
Length 96
Max. P 0.905254
window10097 window10098

overview

Window 7

Location 15,785,420 – 15,785,516
Length 96
Sequences 3
Columns 96
Reading direction forward
Mean pairwise identity 98.26
Mean single sequence MFE -42.80
Consensus MFE -42.53
Energy contribution -42.53
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.79
Structure conservation index 0.99
SVM decision value 0.71
SVM RNA-class probability 0.829300
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15785420 96 + 22224390
GUCCCAUGCCGCCGAGUCCGCCGCCGCUGCCAUCGAGGAUGAUCGCAUGGACGGCGGCAUUGUCGCAGAUGUUCUCACGCGAACUGGACUUGGAAC
...........(((((((((((((((...(((((((......))).)))).)))))))....((((.(.((....)))))))...))))))))... ( -42.30)
>DroSim_CAF1 17154 96 + 1
GUCCCAUGCCGCCGAGUCCGCCGCCGCUGCCAUCGAGGAUGAUCGCAUGGACGGCGGCAUUGUCGCAGAUGUUCUCCCGCGAACUGGACUUGGAUC
...........(((((((((((((((...(((((((......))).)))).)))))))....((((.(........).))))...))))))))... ( -42.80)
>DroYak_CAF1 14860 96 + 1
GUCCCAUGCCGCCGAGUCCGCCGCCGCUGCCAUCGAGGAUGAUCGCAUGGACGGCGGCAUUGUCGCAGAUGUUCUCCCGCGAACUGGACUUGGAGC
.......((..(((((((((((((((...(((((((......))).)))).)))))))....((((.(........).))))...)))))))).)) ( -43.30)
>consensus
GUCCCAUGCCGCCGAGUCCGCCGCCGCUGCCAUCGAGGAUGAUCGCAUGGACGGCGGCAUUGUCGCAGAUGUUCUCCCGCGAACUGGACUUGGAAC
...........(((((((((((((((...(((((((......))).)))).)))))))....((((.((.....))..))))...))))))))... (-42.53 = -42.53 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 15,785,420 – 15,785,516
Length 96
Sequences 3
Columns 96
Reading direction reverse
Mean pairwise identity 98.26
Mean single sequence MFE -44.63
Consensus MFE -42.28
Energy contribution -42.83
Covariance contribution 0.56
Combinations/Pair 1.03
Mean z-score -2.26
Structure conservation index 0.95
SVM decision value 1.04
SVM RNA-class probability 0.905254
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15785420 96 - 22224390
GUUCCAAGUCCAGUUCGCGUGAGAACAUCUGCGACAAUGCCGCCGUCCAUGCGAUCAUCCUCGAUGGCAGCGGCGGCGGACUCGGCGGCAUGGGAC
(((((..((((((....(....).....))).))).((((((((((((.(((.(((......))).)))((....))))))..))))))))))))) ( -44.10)
>DroSim_CAF1 17154 96 - 1
GAUCCAAGUCCAGUUCGCGGGAGAACAUCUGCGACAAUGCCGCCGUCCAUGCGAUCAUCCUCGAUGGCAGCGGCGGCGGACUCGGCGGCAUGGGAC
.......((((.((.((((((......)))))))).((((((((((((.(((.(((......))).)))((....))))))..)))))))).)))) ( -43.10)
>DroYak_CAF1 14860 96 - 1
GCUCCAAGUCCAGUUCGCGGGAGAACAUCUGCGACAAUGCCGCCGUCCAUGCGAUCAUCCUCGAUGGCAGCGGCGGCGGACUCGGCGGCAUGGGAC
(((((.(((((.((.((((((......))))))))...((((((((...(((.(((......))).)))))))))))))))).)).)))....... ( -46.70)
>consensus
GAUCCAAGUCCAGUUCGCGGGAGAACAUCUGCGACAAUGCCGCCGUCCAUGCGAUCAUCCUCGAUGGCAGCGGCGGCGGACUCGGCGGCAUGGGAC
(((((.(((((.((.((((((......))))))))...((((((((...(((.(((......))).)))))))))))))))).)).)))....... (-42.28 = -42.83 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:01 2006