Locus 6195

Sequence ID X_DroMel_CAF1
Location 15,785,223 – 15,785,383
Length 160
Max. P 0.789714
window10095 window10096

overview

Window 5

Location 15,785,223 – 15,785,343
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.11
Mean single sequence MFE -49.60
Consensus MFE -46.19
Energy contribution -45.97
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.97
Structure conservation index 0.93
SVM decision value 0.58
SVM RNA-class probability 0.789714
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15785223 120 - 22224390
CACCAUCAUCGAUCCCAGCAUCAAUUGCAUCAGCCGUCGACGGUGGCGCUGCAGCCGCAGCAGCUGGAUGACGAUGAUGCACCGUCGACGGGACCACUGCGUAUACGCAAUCUGGAGGAC
...((((((((.(((((((.......((....((((....)))).))(((((....))))).)))))..))))))))))..(((....)))..(((.((((....))))...)))..... ( -48.10)
>DroSim_CAF1 16957 120 - 1
CACCAUCAUCGAUCCCAGCACCAGCUGCAUCAGCCGUCGACGGUGGCGCUGCAGCCGCAGCAGCUGGAUGACGAUGAUGCACCGUCGACGGGACCGCUGCGUAUACGCAAUCUGGAGGAC
..((..((.((.((((..((((((((((....((((....))))(((......)))...)))))))).)).(((((......)))))..)))).)).((((....))))...))..)).. ( -49.00)
>DroYak_CAF1 14660 120 - 1
CAUCAUCAUCGAUCGCAGCAUCAGCUGCAUCAGCCGUCGACGGUGGCGCUGCAGCCGCAGCAGCUGGAUGACGAUGAUGCACCGUCGACGGGACCGCUGCGUAUACGCAAUCUGGAGGAU
....(((.(((((.(((((....))))))))..(((((((((((((((((((....))))).))((.....))......))))))))))))))(((.((((....))))...)))..))) ( -51.70)
>consensus
CACCAUCAUCGAUCCCAGCAUCAGCUGCAUCAGCCGUCGACGGUGGCGCUGCAGCCGCAGCAGCUGGAUGACGAUGAUGCACCGUCGACGGGACCGCUGCGUAUACGCAAUCUGGAGGAC
...(((((((((((.((((.......((....((((....)))).))(((((....))))).)))))))..))))))))..(((....)))..(((.((((....))))...)))..... (-46.19 = -45.97 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 15,785,263 – 15,785,383
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 95.56
Mean single sequence MFE -54.57
Consensus MFE -50.30
Energy contribution -50.63
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.93
Structure conservation index 0.92
SVM decision value 0.47
SVM RNA-class probability 0.750004
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15785263 120 - 22224390
CAUGUCGGGUGGCAUGCCGGGCCAUGGCGGCACCAUGCUGCACCAUCAUCGAUCCCAGCAUCAAUUGCAUCAGCCGUCGACGGUGGCGCUGCAGCCGCAGCAGCUGGAUGACGAUGAUGC
((((((.(((.....))).)).))))(((((.....)))))..((((((((.(((((((.......((....((((....)))).))(((((....))))).)))))..)))))))))). ( -54.50)
>DroSim_CAF1 16997 120 - 1
CAUGUCGGGUGGGAUGCCGGGCCAUGGCGGCACCAUGCUGCACCAUCAUCGAUCCCAGCACCAGCUGCAUCAGCCGUCGACGGUGGCGCUGCAGCCGCAGCAGCUGGAUGACGAUGAUGC
((((((.(((.....))).)).))))(((((.....)))))..((((((((.(((((((....(((((....((((....))))(((......)))))))).)))))..)))))))))). ( -55.80)
>DroYak_CAF1 14700 120 - 1
CAUGUCGGGUGGCAUGCCUGGCCAUGGCGGCACCAUGCUCCAUCAUCAUCGAUCGCAGCAUCAGCUGCAUCAGCCGUCGACGGUGGCGCUGCAGCCGCAGCAGCUGGAUGACGAUGAUGC
...(((((((.....))))))).((((.(((.....)))))))((((((((.(((((((....)))))(((.((((....))))((((((((....))))).))).))))))))))))). ( -53.40)
>consensus
CAUGUCGGGUGGCAUGCCGGGCCAUGGCGGCACCAUGCUGCACCAUCAUCGAUCCCAGCAUCAGCUGCAUCAGCCGUCGACGGUGGCGCUGCAGCCGCAGCAGCUGGAUGACGAUGAUGC
((((((.(((.....))).)).))))(((((.....)))))..(((((((((((.((((.......((....((((....)))).))(((((....))))).)))))))..)))))))). (-50.30 = -50.63 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:59 2006