Locus 6194

Sequence ID X_DroMel_CAF1
Location 15,783,567 – 15,783,687
Length 120
Max. P 0.733688
window10094

overview

Window 4

Location 15,783,567 – 15,783,687
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 96.67
Mean single sequence MFE -44.63
Consensus MFE -43.07
Energy contribution -42.63
Covariance contribution -0.44
Combinations/Pair 1.06
Mean z-score -1.72
Structure conservation index 0.97
SVM decision value 0.43
SVM RNA-class probability 0.733688
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15783567 120 + 22224390
GAUGAGUGAUGGGACGAGUGUGGACCGUGCGUGGCAUGUCCAUGGGCAUGGGAGUGGUGCGUAUGAUGUCCGAAUGCGUGGGGUGAGUGCGACUGGUGCGGCGCAUGGCGUCCAGAUGAU
...........(((((....(((((((((((((.(((..((((....))))..))).))))))))..))))).((((((.(.(..((.....))..).).))))))..)))))....... ( -44.80)
>DroSim_CAF1 15317 120 + 1
GAUGAGUGAUGGGACGAGUGUGGACCGUGCGUGGCAUGUCCGUGGGCAUGGGAGUGAUGCGUGUGGUGUCCGAAUGCGUGGGGUGAGUGCGACUGGUGCGGCGCAUGGCGUCCAGAAGAG
...........(((((.(((((..(((..(((.((((..((.((.((((....(.(((((.....))))))..)))).)).))...)))).))..)..))))))))..)))))....... ( -43.70)
>DroYak_CAF1 12848 120 + 1
GAUGAGUGAUGGGACGAGUGUGGACCGUGCGUGGCAUGUCCAUGGGCAUGGGAGUGGUGCGUAUGGUGUCCGAAUGCGUGGGGUGAGUGCGACUGGUGCGGCGCAUGGCGUCCAGAUGAU
...........(((((....(((((((((((((.(((..((((....))))..))).)))))))))..)))).((((((.(.(..((.....))..).).))))))..)))))....... ( -45.40)
>consensus
GAUGAGUGAUGGGACGAGUGUGGACCGUGCGUGGCAUGUCCAUGGGCAUGGGAGUGGUGCGUAUGGUGUCCGAAUGCGUGGGGUGAGUGCGACUGGUGCGGCGCAUGGCGUCCAGAUGAU
...........(((((....(((((((((((((.(((..((((....))))..))).))))))))..))))).((((((.(.(..((.....))..).).))))))..)))))....... (-43.07 = -42.63 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:57 2006