Locus 6192

Sequence ID X_DroMel_CAF1
Location 15,782,498 – 15,782,618
Length 120
Max. P 0.745615
window10092

overview

Window 2

Location 15,782,498 – 15,782,618
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 98.89
Mean single sequence MFE -43.83
Consensus MFE -42.57
Energy contribution -42.90
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.74
Structure conservation index 0.97
SVM decision value 0.46
SVM RNA-class probability 0.745615
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15782498 120 + 22224390
UGCCGCCGAUUGCAAACCGCGACGAAUGGGCGGCUGGAUAACACUUCCACUGCUUUCCGUUUCCGUUGAGGGCGGGGAUGGAUAGUAGUCCCUCUGACUUACACUUAUACCAUUUGGGAC
.((((((.(((((.....))))....).))))))((((.......))))(((((.(((((..((((.....))))..))))).)))))((((.......................)))). ( -44.80)
>DroSim_CAF1 14238 120 + 1
UGCCGCCGAUUGCAAACCGCGACGAAUGGGCAGCUGGAUAACACUUCCACUGCUUUCCGUUUCCGUUGAGGGCGGGGAUGGAUAGUAGUCCCUCUGACUUACACUUAUACCAUUUGGGAC
.....((..((((.....))))(((((((((((.((((.......))))))))..(((((..((((.....))))..)))))..((((((.....))).))).......))))))))).. ( -41.90)
>DroYak_CAF1 11778 120 + 1
UGCCGCCGAUUGCAUACCGCGACGAAUGGGCGGCUGGAUAACACUUCCACUGCUUUCCGUUUCCGUUGAGGGCGGGGAUGGAUAGUAGUCCCUCUGACUUACACUUAUACCAUUUGGGAC
.((((((.(((((.....))))....).))))))((((.......))))(((((.(((((..((((.....))))..))))).)))))((((.......................)))). ( -44.80)
>consensus
UGCCGCCGAUUGCAAACCGCGACGAAUGGGCGGCUGGAUAACACUUCCACUGCUUUCCGUUUCCGUUGAGGGCGGGGAUGGAUAGUAGUCCCUCUGACUUACACUUAUACCAUUUGGGAC
.((((((.(((((.....))))....).))))))((((.......))))(((((.(((((..((((.....))))..))))).)))))((((.......................)))). (-42.57 = -42.90 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:55 2006