Locus 6191

Sequence ID X_DroMel_CAF1
Location 15,782,217 – 15,782,319
Length 102
Max. P 0.892310
window10091

overview

Window 1

Location 15,782,217 – 15,782,319
Length 102
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 80.99
Mean single sequence MFE -33.69
Consensus MFE -18.20
Energy contribution -19.13
Covariance contribution 0.94
Combinations/Pair 1.15
Mean z-score -2.71
Structure conservation index 0.54
SVM decision value 0.97
SVM RNA-class probability 0.892310
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15782217 102 - 22224390
GGAAUAUAAGCAUUGAUAUUGUUAUCUAUAUGAUAGAGAAGAUCAUCCUCAUGGUCCAUAUGAUCC---------AUGCG---------AUCCAUGCGAUCCAUGCGGUCCAUACUGCAU
.........(((.((((....(((((.....))))).....)))).....((((.((.((((((((---------(((..---------...)))).))).)))).)).))))..))).. ( -24.70)
>DroSim_CAF1 13957 102 - 1
GGAAUAUAAGCAUUGAUAUUGUUAUCUAUAUGAUAGAGAAGAUCAUCCUCAUGGUCCAUAUGAUCC---------AUGUG---------GUCCAUGUGGUCCAUGUGGUCCAUACUGCAU
(((..........((((....(((((.....))))).....)))).((.(((((.(((((((..((---------....)---------)..))))))).))))).)))))......... ( -32.80)
>DroEre_CAF1 11891 120 - 1
GGAAUAUAAGCAUUGAUAUUGUUAUCUACAUGUUAGAGGAGAUCAUCCCCAUGGUCCAUCCGAUCCAUACGAUCCAUGUGGGCCAUGUGGGCCAUGUGGCCCAGGUGGUCCACACUGCAU
(((.....(((((.((((....))))...)))))...(((((((((....))))))..)))..)))..........((((((((((.((((((....)))))).))))))))))...... ( -47.90)
>DroYak_CAF1 11467 111 - 1
GGAAUAUAAGCAUUGAUAUUGUUAUCUACAUGGUAGAGAAGAUCAUUCCCAUGGUCCAUGUGAUCC---------AUGUGUUCUAUGUGGUCCAUGUGAUCUAUGUGAUCCAUACCGCAU
((((((((......((((....))))(((((((.......((....)).......)))))))....---------.))))))))(((((((..(((.((((.....)))))))))))))) ( -29.34)
>consensus
GGAAUAUAAGCAUUGAUAUUGUUAUCUACAUGAUAGAGAAGAUCAUCCCCAUGGUCCAUAUGAUCC_________AUGUG_________GUCCAUGUGAUCCAUGUGGUCCAUACUGCAU
(((..........((((....(((((.....))))).....)))).((.(((((.(((((((..............................))))))).))))).)))))......... (-18.20 = -19.13 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:54 2006