Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,718,381 – 1,718,482 |
Length | 101 |
Max. P | 0.980138 |
Location | 1,718,381 – 1,718,482 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.26 |
Mean single sequence MFE | -28.27 |
Consensus MFE | -14.88 |
Energy contribution | -17.24 |
Covariance contribution | 2.36 |
Combinations/Pair | 1.12 |
Mean z-score | -2.52 |
Structure conservation index | 0.53 |
SVM decision value | 1.85 |
SVM RNA-class probability | 0.980138 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1718381 101 - 22224390 --------UGGGUUCUCUUUUGAGUUU-----------UGUUAAAUUAUGUGCUCCAAGCCCUAAACCAUUUUUGGUAUAUCAUAGACAAUUUGAAAAACUUAACUGAGAUCUCAGUUCG --------((((.((((..((((((((-----------(.(((((((....((.....)).....((((....))))...........))))))))))))))))..)))).))))..... ( -24.20) >DroSec_CAF1 2688 112 - 1 --------UGGGGUCUCUUUUGAAUUUUUGCUGGCUUCUGUUAAAUGUGGUGCUACAUGCCAUAAACCAUUUUUGGUAUAUCAAAGACAAUUUGAAAAACUUAACUGAGAUCUCAGUUCG --------(((((((((..((((.((((...((((....))))..((((((.......)))))).((((....))))...(((((.....))))))))).))))..)))))))))..... ( -26.10) >DroSim_CAF1 2683 112 - 1 --------UGGGGUCUCUUUUGAGUUUUUGCUGGCUUCUGUUAAAUGUGGUGCUACAAGCCAUAAACCAUUUUUGGUAUAUCAUAGACAAUUUGAAAAACUUAACUGAGAUCUCAGUUCG --------(((((((((..((((((((((.......(((((....((((((.......)))))).((((....)))).....))))).......))))))))))..)))))))))..... ( -33.34) >DroEre_CAF1 2700 117 - 1 CAAGAGGCUGGGUUCUCAUUGAAGUUUUUGCUUUCUCCUGUUAA---UGGUGUUGUAAACCAUAAAUCAUUAUAUUUAUAUCAUAGACAAUUUGAAAAACUUAAGUGAGAUCUCAGUUCA ...(((.(((((.(((((((.((((((((.(.......((((.(---(((((((((((...........)))))...))))))).))))....))))))))).))))))).)))))))). ( -29.50) >DroYak_CAF1 2723 117 - 1 CAAUUGGCUGGGUGCUCAUUUCAGUUUUUGCUUUCUCCUGUUAA---UGGCGUUGUAAGCCAUAAAUCAUUUUUUUUAUAUCAUUGACAAUUUGAAAAACUUUAGUGAGAUCUCAGUUUA .....(((((((..((((((..(((((((.(.......((((((---((((.......)))(((((........)))))...)))))))....))))))))..))))))..))))))).. ( -28.20) >consensus ________UGGGUUCUCUUUUGAGUUUUUGCUGGCUCCUGUUAAAU_UGGUGCUACAAGCCAUAAACCAUUUUUGGUAUAUCAUAGACAAUUUGAAAAACUUAACUGAGAUCUCAGUUCG ........((((.((((..((((((((((..................((((.......))))...((((....)))).................))))))))))..)))).))))..... (-14.88 = -17.24 + 2.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:35 2006