Locus 6189

Sequence ID X_DroMel_CAF1
Location 15,777,263 – 15,777,380
Length 117
Max. P 0.756181
window10088

overview

Window 8

Location 15,777,263 – 15,777,380
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.73
Mean single sequence MFE -31.72
Consensus MFE -23.94
Energy contribution -23.94
Covariance contribution -0.00
Combinations/Pair 1.07
Mean z-score -2.02
Structure conservation index 0.75
SVM decision value 0.49
SVM RNA-class probability 0.756181
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15777263 117 - 22224390
GCUGUCAUUGUUUUCAUCAUGAGCGGCCACAUAGUUGUGGUCGUCCUCAACAUUUGAAUCCAAGUAUUGCUG---CUGCUGAAGCUGCAUUUGCAUCCUGUGAAAAGAUAUAUAUAUUUA
..((((.(((..((((...((((((((((((....))))))))..)))).....))))..)))(((.(((.(---((.....))).)))..)))............)))).......... ( -32.00)
>DroSec_CAF1 7848 115 - 1
GCUGUCAUUGUUUUCAUCAUGAGCGGCCACAUAGUUGUGGUCGUCCUCAACAUUUGAAUCCAAGUAUUGCUG---CUGCUGAAGCUGCAUUUGCAUCCUGUGAAAGGAUAU--ACAUUUA
.......(((..((((...((((((((((((....))))))))..)))).....))))..)))(((.(((.(---((.....))).)))..)))(((((.....)))))..--....... ( -34.90)
>DroSim_CAF1 6288 115 - 1
GCUGUCAUUGUUUUCAUCAUGAGCGGCCACAUAGUUGUGGUCGUCCUCAACAUUUGAAUCCAAGUAUUGCUG---CUGCUGAAGCUGCAUUUGCAUCCUGCGAAAAGAUAA--ACAUUUA
..((((.(((..((((...((((((((((((....))))))))..)))).....))))..)))....(((.(---((.....))).)))(((((.....)))))..)))).--....... ( -33.20)
>DroEre_CAF1 7873 116 - 1
GCUAUCAUUGUUUUCAUCAUGAGCGGCUACAUAGUUGUGAUCGUCCUCAACAUUUGAAUCCAAGUAUUGCUGCUGCUGCUGAAGCUGCAUUUGUAUCCUGAGAAAAGAU----AUAGUUA
(((((...(.(((((.(((.(((((((......((((.(......).))))(((((....)))))...)))))(((.((....)).)))......)).)))))))).).----))))).. ( -26.80)
>DroYak_CAF1 7520 114 - 1
GCUAUCAUUGUUUUCAUCAUGAGCGGCUACAUAGUUGUGAUCGUCCUCAACAUUUGAAUCCAAAUAUUGCUG---CUGCUGAAGCUGCAUUUGCAUCCUGAGAAAAGAUG---AUAGUUA
(((((((((.(((((((((..((((((......((((.(......).))))(((((....)))))...))))---))..)))...(((....)))...))))))..))))---))))).. ( -31.70)
>consensus
GCUGUCAUUGUUUUCAUCAUGAGCGGCCACAUAGUUGUGGUCGUCCUCAACAUUUGAAUCCAAGUAUUGCUG___CUGCUGAAGCUGCAUUUGCAUCCUGAGAAAAGAUA___AUAUUUA
(((.((((((..((((...((((((((((((....))))))))..)))).....))))..))).....((.......))))))))(((....)))......................... (-23.94 = -23.94 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:52 2006