Locus 6187

Sequence ID X_DroMel_CAF1
Location 15,776,383 – 15,776,503
Length 120
Max. P 0.764074
window10085

overview

Window 5

Location 15,776,383 – 15,776,503
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.33
Mean single sequence MFE -39.88
Consensus MFE -35.14
Energy contribution -35.06
Covariance contribution -0.08
Combinations/Pair 1.08
Mean z-score -1.40
Structure conservation index 0.88
SVM decision value 0.51
SVM RNA-class probability 0.764074
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15776383 120 - 22224390
AUGCGAGUGUUACAUCCACGAAUCUCUGGCCUGCUAGCAGCUGCGGAAAAGCAGCUCCAAUGCUGCCCAAAUGGCUGUUCCAGCGUACACAAAAUUCCUGUGUAGCGCCGCUCAUCGUAC
..(((.(((((((((....((((...(((..((((((((((((.((....(((((......)))))))...))))))))..))))..).))..))))..))))))))))))......... ( -37.00)
>DroSec_CAF1 6977 120 - 1
AUGCGAGUGUUACGUCCACGAAUCUCUGGCCCGCCAGCAGCUGCGGAAAAGCAGCUCCAAUGCUGCCCAAAUGGCUGUUCCAGCGUACACAAAAUUCUUGUGUAGCGCCGCUCAUCGUAC
.((((((((.......)))......((((....)))).(((.((((((..(((((......)))))((....))...)))).((.(((((((.....))))))))))).)))..))))). ( -38.70)
>DroSim_CAF1 5414 120 - 1
AUGCGAGUGUUACGUCCACGAAUCUCUGGCCCGCCAGCAGCUGCGGAAAAGCAGCUCCAAUGCUGCCCAAAUGGCUGUUCCAGCGUACACAAAAUUCCUGUGUAGCGCCGCUCAUCGUAC
.((((((((.......)))......((((....)))).(((.((((((..(((((......)))))((....))...)))).((.((((((.......)))))))))).)))..))))). ( -37.50)
>DroEre_CAF1 6996 120 - 1
AGGCGAGUGUUACGUCCACGAAUCUCUGGCCUGCCAGCAGCUGCGGAAACGCAGCUCCAAUGCUGCCCAAAUGGCUGUUCCAGCGUACACAAAAUUCCUGGGUAGCGCCGCUCAUCGUAC
((((.((.(...((....))...).)).))))((..(((((((((....))))))).....((((((((....((((...))))(....)........)))))))))).))......... ( -45.30)
>DroYak_CAF1 6643 120 - 1
AGGCGAGUGUUACGUCCACGAAUCUCUGGCCCGCCAGCAACUGCGGAAACGCAGCUCCAAUGCUGCCCAAGUGGCUGUUCCAGCGUACACAAAAUUCCUGGGUAGCGCCGCUCAUCGUAC
.((((.(((((((..(((.(((((.((((..(((((((....))(....)(((((......))))).....)))).)..)))).)........)))).))))))))))))))........ ( -40.90)
>consensus
AUGCGAGUGUUACGUCCACGAAUCUCUGGCCCGCCAGCAGCUGCGGAAAAGCAGCUCCAAUGCUGCCCAAAUGGCUGUUCCAGCGUACACAAAAUUCCUGUGUAGCGCCGCUCAUCGUAC
..(((.((((((((..((.(((((.((((..(((((((....))((....(((((......)))))))...)))).)..)))).)........)))).)))))))))))))......... (-35.14 = -35.06 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:48 2006