Locus 6184

Sequence ID	X_DroMel_CAF1
Location	15,773,779 – 15,773,893
Length	114
Max. P	0.514649

overview

Window 8

Location	15,773,779 – 15,773,893
Length	114
Sequences	4
Columns	114
Reading direction	forward
Mean pairwise identity	90.92
Mean single sequence MFE	-25.90
Consensus MFE	-18.33
Energy contribution	-19.07
Covariance contribution	0.75
Combinations/Pair	1.13
Mean z-score	-1.84
Structure conservation index	0.71
SVM decision value	-0.04
SVM RNA-class probability	0.514649
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15773779 114 + 22224390
GUUAACUAGUGUAAGUUUAGCUGCGGAUGCUGUAGCAAAACAUUUUCGACACCUAACUAGACUUAUACUAUCAUUCUGAUCUAUUAUAUUAUACCAAUGUGCGUUUUACAUCUG
((.(((((((((((((((((((((((...)))))))....(......).........)))))))))))))..............((((((.....)))))).)))..))..... ( -21.60)
>DroSec_CAF1 4351 114 + 1
GUUAACUAGUGUAAGUUUAGCUGCGGAUGCUGUAGCAAAACAUUUUCGACACCUAACUAGACUUAUACUAUCAUUCCGAUCUAUCAUAUUGUACCAAUGUGCGUUUUACAUCUG
((.(((((((((((((((((((((((...)))))))....(......).........)))))))))))))..............(((((((...))))))).)))..))..... ( -24.70)
>DroEre_CAF1 4461 113 + 1
GUUACCAAGUGUAAGUUUAGUUGUGGAUGCUGUAG-AAAACAUUUUCGACAGCUAACUAGACUUAUACUAUGAUUCUGUUCUAUCAUAUCGUACUAAUAUGCGUUUUAUAUCCG
.......((((((((((((((((.....(((((.(-(((....)))).)))))))))))))))))))))(((((........)))))..((((......))))........... ( -29.80)
>DroYak_CAF1 4259 113 + 1
GUUAACUAGUGUAAGUUUAGCUGUGGAUGCUGUAG-AAAACAUUUGCGACAGCUAACUAGACUUAUACUAUGAUUAUGAUCUAUCAUAUCGUACUAAUAUGCGUUUUACAUCCG
((.(((.(((((((((((((((((.(....(((..-...)))....).)))))))....))))))))))(((((.((((....)))))))))..........)))..))..... ( -27.50)
>consensus
GUUAACUAGUGUAAGUUUAGCUGCGGAUGCUGUAG_AAAACAUUUUCGACACCUAACUAGACUUAUACUAUCAUUCUGAUCUAUCAUAUCGUACCAAUAUGCGUUUUACAUCCG
......(((((((((((((((((((((...(((......)))..)))).))))))....)))))))))))..............((((((.....))))))............. (-18.33 = -19.07 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:42 2006