| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,773,496 – 15,773,607 |
| Length | 111 |
| Max. P | 0.770179 |
| Location | 15,773,496 – 15,773,607 |
|---|---|
| Length | 111 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 98.35 |
| Mean single sequence MFE | -23.65 |
| Consensus MFE | -22.60 |
| Energy contribution | -22.60 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.770179 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15773496 111 + 22224390 UACGUAAAGAAAAUUGAUUAAAUAAUCAAGCAAAUCCAACUGUGUGCGAAAGUAUUAUUGCAUUGGCCAAUAAAUAAAGAUUUACUGGGCACAGACUUACGAGGCUUUUAU ..(((((......((((((....))))))..........((((((((....)).............(((.(((((....))))).)))))))))..))))).......... ( -22.60) >DroSec_CAF1 4069 111 + 1 UACGUAAAGAAAAUUGAUUAAAUAAUCAAGCAAAUCCAACUGUGUGCGAAAGUAUUAUUGCAUUGGCCAAUAAAUAAAGAUUUACUGGGCACAGACUUACGAGGCUUUUAU ..(((((......((((((....))))))..........((((((((....)).............(((.(((((....))))).)))))))))..))))).......... ( -22.60) >DroEre_CAF1 4193 111 + 1 UACGUAAAGAAAAUUGAUUAAAUAAUCAAGCAAAUCCAACUGUGUGCGAAAGUAUUAUUGCAUUCGCCAAUAAAUAAAGAUUUACUGGGCACAGACUUACGAGGUUGUUAU ..(((((......((((((....))))))..........(((((((((((.(((....))).)))))((.(((((....))))).)).))))))..))))).......... ( -24.70) >DroYak_CAF1 3977 111 + 1 UACGUAAAGAAAAUUGAUUAAAUAAUCAAGCAAAUCCAACUGUGUGCGAAAGUAUUAUUGCAUUCGCCAAUAAAUAAAGAUUUACUGGGCACAGACUUACGAGGCUGUUAU ..(((((......((((((....))))))..........(((((((((((.(((....))).)))))((.(((((....))))).)).))))))..))))).......... ( -24.70) >consensus UACGUAAAGAAAAUUGAUUAAAUAAUCAAGCAAAUCCAACUGUGUGCGAAAGUAUUAUUGCAUUCGCCAAUAAAUAAAGAUUUACUGGGCACAGACUUACGAGGCUGUUAU ..(((((......((((((....))))))..........((((((((....)).............(((.(((((....))))).)))))))))..))))).......... (-22.60 = -22.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:41 2006