Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,772,904 – 15,773,000 |
Length | 96 |
Max. P | 0.926508 |
Location | 15,772,904 – 15,773,000 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 82.40 |
Mean single sequence MFE | -29.68 |
Consensus MFE | -21.30 |
Energy contribution | -21.82 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.24 |
Mean z-score | -2.22 |
Structure conservation index | 0.72 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.926508 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15772904 96 + 22224390 UAUACUGAUGCUGUGUGUUGUGUCGAUUCGAAUCGACUGAUACUGUGUGCGGGCCAUGAUCUAGCGUACUUAUGCUCUUCAGCACACAGCAGAAGA ....((..((((((((((((.((((((....)))))).....(((....)))..........(((((....)))))...))))))))))))..)). ( -33.70) >DroSec_CAF1 3456 96 + 1 UAUACUGAUGCUGUGUGUUGUAUCGAUUCGAAUCGACUGAUACUGUGUGCGGGCCAUGAUCUAGCGUACUUAUGCUCUUCAGCACACAGCAGAGGA ....((..((((((((((((..(((((....)))))......(((....)))..........(((((....)))))...))))))))))))..)). ( -30.60) >DroEre_CAF1 3607 96 + 1 UAUACUGAUGCUGUGUGUUGUAUCGAUUCGAAUCGACGGAUACUGUGUGCGGGCCAUGAUCUAGCGUACUUAUGCUUUUCAGCACACAGCAUAAGA ....((.(((((((((((((..(((((....))))).((...(((....))).)).......(((((....)))))...))))))))))))).)). ( -33.50) >DroYak_CAF1 3570 96 + 1 UAUACUGAUGCUGUGUGUUGUAUCGAUUCGAAUCGACGGAUACUGUGUGCGGGCCAUGAUCUAGCGUACUUAUGCUCUUCAGCACACAGCAGAAGA ....((..((((((((((((..(((((....))))).((...(((....))).)).......(((((....)))))...))))))))))))..)). ( -33.60) >DroPer_CAF1 134835 96 + 1 UGAAUUUUUGGUACGUAUUGUAGCGAUUUGAAACGACAGAUACUUUAUGUGCAUCAUCGGUUAAAGUGACAACAUUUUUCCACACAAAGCAAAAUA .....((((((((((((..(((.((........)).....)))..)))))))......((..((((((....)))))).))........))))).. ( -17.00) >consensus UAUACUGAUGCUGUGUGUUGUAUCGAUUCGAAUCGACGGAUACUGUGUGCGGGCCAUGAUCUAGCGUACUUAUGCUCUUCAGCACACAGCAGAAGA ....((..((((((((((((..(((((....)))))........((((((.............))))))..........))))))))))))..)). (-21.30 = -21.82 + 0.52)
Location | 15,772,904 – 15,773,000 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 82.40 |
Mean single sequence MFE | -24.40 |
Consensus MFE | -19.36 |
Energy contribution | -19.08 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.23 |
Mean z-score | -1.75 |
Structure conservation index | 0.79 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.773731 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15772904 96 - 22224390 UCUUCUGCUGUGUGCUGAAGAGCAUAAGUACGCUAGAUCAUGGCCCGCACACAGUAUCAGUCGAUUCGAAUCGACACAACACACAGCAUCAGUAUA .((..(((((((((.((..........((..((((.....))))..))...........((((((....)))))).)).)))))))))..)).... ( -27.90) >DroSec_CAF1 3456 96 - 1 UCCUCUGCUGUGUGCUGAAGAGCAUAAGUACGCUAGAUCAUGGCCCGCACACAGUAUCAGUCGAUUCGAAUCGAUACAACACACAGCAUCAGUAUA .....(((((((((.((..........((..((((.....))))..))...........((((((....)))))).)).)))))))))........ ( -25.60) >DroEre_CAF1 3607 96 - 1 UCUUAUGCUGUGUGCUGAAAAGCAUAAGUACGCUAGAUCAUGGCCCGCACACAGUAUCCGUCGAUUCGAAUCGAUACAACACACAGCAUCAGUAUA .((.((((((((((((....)))....((..((((.....))))..)).....(((((..(((...)))...)))))...))))))))).)).... ( -28.70) >DroYak_CAF1 3570 96 - 1 UCUUCUGCUGUGUGCUGAAGAGCAUAAGUACGCUAGAUCAUGGCCCGCACACAGUAUCCGUCGAUUCGAAUCGAUACAACACACAGCAUCAGUAUA .((..(((((((((.((..........((..((((.....))))..))...........((((((....)))))).)).)))))))))..)).... ( -25.70) >DroPer_CAF1 134835 96 - 1 UAUUUUGCUUUGUGUGGAAAAAUGUUGUCACUUUAACCGAUGAUGCACAUAAAGUAUCUGUCGUUUCAAAUCGCUACAAUACGUACCAAAAAUUCA .....(((((((((((.(.....((((......))))......).)))))))))))..(((.((........)).))).................. ( -14.10) >consensus UCUUCUGCUGUGUGCUGAAGAGCAUAAGUACGCUAGAUCAUGGCCCGCACACAGUAUCAGUCGAUUCGAAUCGAUACAACACACAGCAUCAGUAUA .....((((((((((......((....))..((((.....))))..))))))))))...((((((....))))))..................... (-19.36 = -19.08 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:40 2006