Locus 6180

Sequence ID X_DroMel_CAF1
Location 15,762,788 – 15,762,897
Length 109
Max. P 0.998384
window10070

overview

Window 0

Location 15,762,788 – 15,762,897
Length 109
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 90.92
Mean single sequence MFE -30.90
Consensus MFE -29.56
Energy contribution -29.72
Covariance contribution 0.16
Combinations/Pair 1.03
Mean z-score -1.96
Structure conservation index 0.96
SVM decision value 3.09
SVM RNA-class probability 0.998384
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15762788 109 + 22224390
CGUUAGCACUAAUGUGGCGAGGACUCAGGCUCACUGGGUUCGAAUCCACCGUCGCACAUUGGUCGAUCACACGAAAACGCUGGCCAAAUAUCCAAAAAUCAAUAUUAAG
.((((((.((((((((.(((((((((((.....))))))))(....)....)))))))))))(((......)))....))))))......................... ( -31.30)
>DroSec_CAF1 2461 109 + 1
CGUUAGCACUAAUGUGGCGAGGACUCAGGCUCACUGGGUUCGAAUCCACCGUCGCACAUUGGUCGAUCACACGAAAACGCUAGCCAAAAGUCCAAAAAUCAAUAUUAAG
.((((((.((((((((.(((((((((((.....))))))))(....)....)))))))))))(((......)))....))))))......................... ( -31.70)
>DroSim_CAF1 2475 106 + 1
CGUUAGCACUAAUGUGGCGAGGACUCA-GCUCACUGGGUUCGAAUCCACCGUCGCACAUUGGUCGAUCACACGA-AACGCUAGCCAA-AGUCAAAANNNNNNNNNNNNN
.((((((.((((((((.((((((((((-(....))))))))(....)....)))))))))))(((......)))-...))))))...-..................... ( -30.40)
>DroEre_CAF1 2445 109 + 1
CGUUAGCACUAAUGUGACGAGGACUCAGGCUCACUGGGUUCGAAUCCACCGCCGCACAUUGGUCGAUCACACGAAAACGCUGGCCAAAAGUCACAAAAUCAAUAUUAGG
.((((((.((((((((.((.((((((((.....))))))))(....).....))))))))))(((......)))....))))))......................... ( -29.80)
>DroYak_CAF1 2426 109 + 1
CGUUAGCACUAAUGUGGCGAGGACUCAGGCUCACUGGGUUCGAAUCCACCGUCGCACAUUGGUCGAUCACACGAAAACGCUGGCCAAAAGUCCAAAAAUCAAUAUUAAG
.((((((.((((((((.(((((((((((.....))))))))(....)....)))))))))))(((......)))....))))))......................... ( -31.30)
>consensus
CGUUAGCACUAAUGUGGCGAGGACUCAGGCUCACUGGGUUCGAAUCCACCGUCGCACAUUGGUCGAUCACACGAAAACGCUGGCCAAAAGUCCAAAAAUCAAUAUUAAG
.((((((.((((((((.(((((((((((.....))))))))(....)....)))))))))))(((......)))....))))))......................... (-29.56 = -29.72 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:35 2006