Locus 6179

Sequence ID X_DroMel_CAF1
Location 15,757,945 – 15,758,059
Length 114
Max. P 0.876722
window10069

overview

Window 9

Location 15,757,945 – 15,758,059
Length 114
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.56
Mean single sequence MFE -29.85
Consensus MFE -18.18
Energy contribution -19.18
Covariance contribution 1.01
Combinations/Pair 1.25
Mean z-score -1.98
Structure conservation index 0.61
SVM decision value 0.90
SVM RNA-class probability 0.876722
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15757945 114 - 22224390
AAAAC------CAGCACCAGCUAGUGAAUUCUGUAGCGAAACCUCAUAUUCCAGACCGAGAGCAUCGUUUUUGUUGCAUACACAGACACCGCUCUUGGACUCAACGGAUUCACUUGCUCC
.....------.......(((.(((((((.((((.(.(((........))))...((((((((...((((.(((.....))).))))...)))))))).....))))))))))).))).. ( -32.20)
>DroSec_CAF1 4092 114 - 1
AAAAC------CAGCACCAGCUAGUGAAUUCUGUAGCGAAACCUCAUAUUCCAGCCCGAGAGCAUCGUUUUUGUUGCACACACAGACACCGCUCUUGGACUCAACGGACUCACUUGCUCC
.....------.......(((.(((((..(((((.(.(((........))))((.((((((((...((((.(((.....))).))))...)))))))).))..))))).))))).))).. ( -29.60)
>DroSim_CAF1 3611 114 - 1
AAAAC------CAGCACCAGCUAGUGAGUUCUGUAGCGAAACCUCAUAUUCCAGACCGAGAGCAUCGUUUUUGUUGCACACACAGACAGCGCUCUUGGACUCAACGGACUCACUUGCUCC
.....------.......(((.(((((((.((((.(.(((........))))...((((((((...((((.(((.....))).))))...)))))))).....))))))))))).))).. ( -33.80)
>DroEre_CAF1 3964 114 - 1
AAAAC------CAGCUCCAGCAAGUGAGUUCUGUAACGAUACCUCAUACUCCAGCCCGAGGGCGUCGUUUUUGUUGCACACACAGACGCCGCUUUUGGACUCAACGGACUCACUAGCUCC
.....------.......(((.(((((((.((((...((....)).......((.(((((((((.(((((.(((.....))).))))).))))))))).))..))))))))))).))).. ( -36.50)
>DroWil_CAF1 2459 120 - 1
AAAAGUGCUGGCAUUCCCAUUCAGUGAUGCUGGUAAUGGUAGCUCGCAUUCAAGUCCAACUACAUCGUGCUCAGCACACACACAAACAUCGCUGUCAGAAUUAAUCCCUUCACUAAUAUC
...((((..((.(((...((((.(((.((((((((...((((...((......))....))))....))).))))))))..(((........)))..)))).))).))..))))...... ( -24.40)
>DroYak_CAF1 3944 114 - 1
AAAAC------CAGCUCCAGCUAGUGAAUUCUGCAACGAAACCUCAUAUUCCAAUCCGAGAGCAUCGUUUUUGUUGCAGACACAGACACCGCUUUUCGACUCAACGGACUCACUGACGCC
.....------.(((....)))(((((..((((((((((((.(..((.(((........))).)).).))))))))))))........(((.............)))..)))))...... ( -22.62)
>consensus
AAAAC______CAGCACCAGCUAGUGAAUUCUGUAACGAAACCUCAUAUUCCAGACCGAGAGCAUCGUUUUUGUUGCACACACAGACACCGCUCUUGGACUCAACGGACUCACUUGCUCC
...................((.(((((...((((...((....))..........((((((((...((((.(((.....))).))))...)))))))).....))))..))))).))... (-18.18 = -19.18 +   1.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:34 2006