Locus 6177

Sequence ID X_DroMel_CAF1
Location 15,753,194 – 15,753,306
Length 112
Max. P 0.912354
window10064

overview

Window 4

Location 15,753,194 – 15,753,306
Length 112
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 79.96
Mean single sequence MFE -39.17
Consensus MFE -22.63
Energy contribution -23.42
Covariance contribution 0.79
Combinations/Pair 1.39
Mean z-score -2.54
Structure conservation index 0.58
SVM decision value 1.08
SVM RNA-class probability 0.912354
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15753194 112 + 22224390
CGGCGAGUCCAAUGAUCAUGGUGAUGAUGGUCAUACGAAGAAGAGCGAUCAGGAGCGAGAAUUCUUUGUCCUCGUGGCGCUGGGCGUGGUCAUUGUUAUGGUGGUCAUCAUA
.((.....)).((((((((.((((..(((..(((.(......)((((.(((.(((.((.((....)).))))).)))))))....)))..)))..)))).)))))))).... ( -38.80)
>DroVir_CAF1 13358 109 + 1
---GAAUAACAAUAACCAGCUCGACGAUGACAUCAAGAACAAGGAGAACAGCGAGCGCGAGUUCUUUGUGCUCGUAGCGCUCGGCGUUGUCAUUGUGAUGGUCAUCAUCAUA
---...................((.(((((((((....((((.((.(((..(((((((((((.......))))...)))))))..))).)).))))))).)))))).))... ( -34.60)
>DroGri_CAF1 14633 109 + 1
---CGAAAACAAUAACCAGCAGGAUGAUGACCUCAAGAAAAAGGAAGACAACGAGCGUGAGUUCUUUGUGCUCAUUGCGCUCGGCGUUGUCAUUGUCAUGGUGGUCAUUAUA
---.......(((.((((.((.((..(((((((........)))..(((..(((((((((((.......))))...)))))))..))).))))..)).)).)))).)))... ( -35.40)
>DroSec_CAF1 7656 112 + 1
GGGCGAGUCCAAUGACCAUGAUGAUGAUGGUCAUACGAAGAAGAGCGAUCAGGAGCGAGAGUUCUUUGUCCUCGUGGCGCUGGGCGUGGUCAUUGUUAUGGUGGUCAUCAUU
(((....))).((((((((.((((..(((..(((........(((.(((.((((((....)))))).))))))...((.....)))))..)))..)))).)))))))).... ( -45.80)
>DroEre_CAF1 7286 112 + 1
GGGCGAGUCCAAUAACCAUGGUGAUGAUGGCCAUACGAAGAAGAGCGAUCAGGAGAGGGAGUUCUUUGUCCUCGUGGCGCUGGGCGUGGUCAUUGUUAUGGUGGUCAUCAUA
(((....)))....(((((.((((..(((((((..(..((....((.((.((((.((((....)))).)))).)).)).))..)..)))))))..)))).)))))....... ( -43.30)
>DroYak_CAF1 6501 112 + 1
CGGCGAGUCCAAUAACCAUGGUGAUGAUGGCCAUACGAAGAAGAGCGAUCAGGAGAGGGAGUUUUUUGUACUCGUGGCACUGGGCGUGGUCAUUGUUAUGGUGGUCAUCAUA
.((.....))..........((((((((.(((((((((.((...(((..(((....(.((((.......)))).)....)))..)))..)).))).)))))).)))))))). ( -37.10)
>consensus
_GGCGAGUCCAAUAACCAUGGUGAUGAUGGCCAUACGAAGAAGAGCGAUCAGGAGCGAGAGUUCUUUGUCCUCGUGGCGCUGGGCGUGGUCAUUGUUAUGGUGGUCAUCAUA
..............(((((.((((((((((((((((((.((((((...((......))...))))))....)))).((.....)))))))))))))))).)))))....... (-22.63 = -23.42 +   0.79)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:29 2006