| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,743,366 – 15,743,465 |
| Length | 99 |
| Max. P | 0.999828 |
| Location | 15,743,366 – 15,743,465 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 92.25 |
| Mean single sequence MFE | -23.22 |
| Consensus MFE | -20.70 |
| Energy contribution | -20.50 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.79 |
| Structure conservation index | 0.89 |
| SVM decision value | 4.18 |
| SVM RNA-class probability | 0.999828 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15743366 99 + 22224390 GACCUGCUCAGAAAUAACUCGUUCAUUUCACACUAUGUACUUAUGUACA----UGUACAUGCAUGGCUAUGUACGAUCAGCUCGAGAACAAAAGUUUUCACUU ((.(((.((.(((((((....)).))))).....((((((....)))))----)((((((((...)).)))))))).))).))((((((....)))))).... ( -24.60) >DroSec_CAF1 2362 99 + 1 GACCUGCUCAGAAAAAACUUGUUCAUCUCACAUUAUGUACUUAUGUACA----UGUACAUGCAUGGCUAUGUACGAUCAGCUCGAGAACAAAAGUUUUCACUU ((.(((.((.........................((((((....)))))----)((((((((...)).)))))))).))).))((((((....)))))).... ( -23.50) >DroSim_CAF1 2367 99 + 1 GACCUGCUCAGAAAAAACUUGUUCAUCUCACAUUAUGUACUUAUGUACA----UGUACAUGCAUGGCUAUGUACGAUCAGCUCGAGAACAAAAGUUUUCACUU ((.(((.((.........................((((((....)))))----)((((((((...)).)))))))).))).))((((((....)))))).... ( -23.50) >DroEre_CAF1 2384 99 + 1 GACCUGCUCAGAAAUAAGUUUUUCAUCUCACACUAUGUACUUAUGUACA----UGUACAUACAUGGCUAUGUAUGAUCAGCUCGAGAACACACGUUUUCACUU ((.(((.(((((((......)))).........(((((((....)))))----))((((((......))))))))).))).))((((((....)))))).... ( -22.90) >DroYak_CAF1 2390 103 + 1 GACCUGCUCAGAAAUAAGUCUUUCAUCUCACACUAUAUACUUAUGUACAUAUAUGUACAUACAUGACUAUGUACGAUCAGCUCGAGAACAAACGUUUUCACUU ((.(((.((.((((......))))....................((((((((((((....)))))..))))))))).))).))((((((....)))))).... ( -21.60) >consensus GACCUGCUCAGAAAUAACUUGUUCAUCUCACACUAUGUACUUAUGUACA____UGUACAUGCAUGGCUAUGUACGAUCAGCUCGAGAACAAAAGUUUUCACUU ((.(((.((..........................(((((....))))).....(((((((......))))))))).))).))((((((....)))))).... (-20.70 = -20.50 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:16 2006