Locus 6170

Sequence ID X_DroMel_CAF1
Location 15,743,248 – 15,743,356
Length 108
Max. P 0.500000
window10049

overview

Window 9

Location 15,743,248 – 15,743,356
Length 108
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 80.97
Mean single sequence MFE -26.08
Consensus MFE -17.20
Energy contribution -17.08
Covariance contribution -0.12
Combinations/Pair 1.16
Mean z-score -1.57
Structure conservation index 0.66
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15743248 108 - 22224390
GUAAAUAAU-----GUAAUGUGCAUAUGAAUAAGUCAAGGUAUUAGGGUUAUAUGCUAUACUCUAGUGCUCCCACAGGACUAAACACAUAUG--CCCGCAGUGUGCCCAUACUUG
.........-----(((.((((((((((....((((..(((((((((((..........))))))))))).......)))).....))))))--)..)))...)))......... ( -24.50)
>DroSec_CAF1 2247 105 - 1
GUAAAUAAUGGCAUGUAAUGGGCAUAUGAAUAAGUCAAGUCAUUAGGGUUAUAUGCUAUAUUCUUGUGCUCACACAGGACUAAAUA----------CGCAGUGUGCCCAUAUUUG
.....(((((((((((.....)))).(((.....))).)))))))((((....((((((..(((((((....)))))))....)))----------.)))....))))....... ( -26.20)
>DroSim_CAF1 2252 105 - 1
GUAAAUAAUGGCAUGUAAUGUGCAUAUGAAUAAGUCAAGUCAUUAGGGUUAUAUGCUAUAUUCUUGUGCUCACACAGGACUAAAUA----------CGCAGUGUGCCCAUAUUUG
.....(((((((((((.....)))).(((.....))).)))))))((((....((((((..(((((((....)))))))....)))----------.)))....))))....... ( -26.10)
>DroEre_CAF1 2264 115 - 1
GUAAAUAAAGACGUGCAAUGUGCUUACGAAUAAAUCAAACAGAUAGGGUUAUAUGCCAUAUUCCUGUGUUCACACAGGACCAAAUAUAUAUAAGCCAGCAGUGUGCCCAUACUUG
............(..((...((((.........(((.....))).((.(((((((......(((((((....))))))).......))))))).)))))).))..)......... ( -26.62)
>DroYak_CAF1 2267 113 - 1
GUAAAUAAAGACAUGCAAUGUGCAUACGAAUAAAGCAAGCUGAUAGGGUUAUAUGCCGUAUUCCUGUGUUCAAACAGGACCAAAUAUAUAUA--CCAGCAGUGUGCCCAUACUUG
.................(((.(((((((.......)..(((((((.(((.....))).)))((((((......)))))).............--.)))).)))))).)))..... ( -27.00)
>consensus
GUAAAUAAUGACAUGUAAUGUGCAUAUGAAUAAGUCAAGCCAUUAGGGUUAUAUGCUAUAUUCUUGUGCUCACACAGGACUAAAUA_AUAU___CCCGCAGUGUGCCCAUACUUG
.................(((.((((((...................(((.....)))....(((((((....))))))).....................)))))).)))..... (-17.20 = -17.08 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:15 2006