Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,699,446 – 1,699,537 |
Length | 91 |
Max. P | 0.950935 |
Location | 1,699,446 – 1,699,537 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 82.72 |
Mean single sequence MFE | -34.72 |
Consensus MFE | -23.33 |
Energy contribution | -24.95 |
Covariance contribution | 1.62 |
Combinations/Pair | 1.19 |
Mean z-score | -4.10 |
Structure conservation index | 0.67 |
SVM decision value | 1.41 |
SVM RNA-class probability | 0.950935 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1699446 91 + 22224390 -----UUUUGUUUAUAUCGCGAGCGUUCGCUAAUCGCGCCAUUUAGUUGUCUUUCAACUGCAAGUGCGGGCGGUUAGCGAAGGUUCGCCAACAAAU -----.((((((......((((((.((((((((((((.(((((((((((.....))))))..)))).).)))))))))))).)))))).)))))). ( -42.00) >DroVir_CAF1 19347 78 + 1 AUACAUAUUGUUUAUAUCGCGCUCG-UCGCUAAACGCGCCAUUUAGUUUGAUUUGAGUUGCAAGUGCAAGCGGGCG----AGC------------- ....................(((((-(((((..((..((.((((((......)))))).))..))...))).))))----)))------------- ( -20.60) >DroSec_CAF1 39636 91 + 1 -----UGUUGUUUAUAUCGCGAGCGUUCGCUAAUCGCGCCAUUUAGUUGUCUUUCAACUGCAAGUGUAGGCGGUUAGCGAAGGUUCGCCACCAAAU -----.............((((((.((((((((((((..((((((((((.....))))))..))))...)))))))))))).))))))........ ( -37.70) >DroSim_CAF1 33777 91 + 1 -----UUUUGUUUAUAUCGCGAGCGUUCGCUAAUCGCGCCAUUUAGUUGUCUUUCAACUGCAAGUGCAGGCGGUUAGCGAAGGUUCGCCACCAAAU -----.............((((((.((((((((((((..((((((((((.....))))))..))))...)))))))))))).))))))........ ( -37.70) >DroEre_CAF1 35598 90 + 1 -----UUUUGUUUAUAUCGCGAGCGUUCGCUAAUCGCGCCAUUUAGUUGGCUUUCAACUGCAAGUGCAGGCGGUUAG-UAAGGCUCGCCACCAAAU -----.............((((((.((.(((((((((((((......))))......((((....))))))))))))-))).))))))........ ( -38.10) >DroYak_CAF1 33936 91 + 1 -----UUUUGUUUAUAUCGCGAGCGUUCGCUAAUCGCGCCAUUUAGUUGGCUUUCAGCUGCAAGUGCAGGCGGUUAGCUAAGGUUCCCUACCAAGU -----...............((((.((.(((((((((((((......))))......((((....))))))))))))).)).)))).......... ( -32.20) >consensus _____UUUUGUUUAUAUCGCGAGCGUUCGCUAAUCGCGCCAUUUAGUUGGCUUUCAACUGCAAGUGCAGGCGGUUAGCGAAGGUUCGCCACCAAAU ..................((((((.((.(((((((((..((((((((((.....))))))..))))...))))))))).)).))))))........ (-23.33 = -24.95 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:32 2006