Locus 6168

Sequence ID X_DroMel_CAF1
Location 15,738,714 – 15,738,834
Length 120
Max. P 0.810395
window10046

overview

Window 6

Location 15,738,714 – 15,738,834
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 79.05
Mean single sequence MFE -24.42
Consensus MFE -15.74
Energy contribution -18.14
Covariance contribution 2.40
Combinations/Pair 1.00
Mean z-score -1.87
Structure conservation index 0.64
SVM decision value 0.65
SVM RNA-class probability 0.810395
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15738714 120 - 22224390
UUAACUUAAUCCUGUAACUUAAUCGUUUCUUGGAAACGGGACAGCUGAUGAUUCCACAAAUCCGAGAAUCCGGAUGGGGAAUAUGUACAUACAUACAAAUAACAUGUUUCUUACAGAAAU
...........((((((...((((((((((((....))))).....)))))))(((....((((......)))))))(((((((((...............))))))))))))))).... ( -27.26)
>DroSec_CAF1 11413 120 - 1
UUAACUUAAUCCUGUAACUUAAUCGUUUCUUGGAAACGGGACAGCUGAUGAUUCCACAAAUCCGAGCAUCCGGAUGGGGAAUAUGUACAUACAUACAAAUAACAUGUUUCUUACAGAAAU
...........((((((...((((((((((((....))))).....)))))))(((....((((......)))))))(((((((((...............))))))))))))))).... ( -27.26)
>DroSim_CAF1 11877 120 - 1
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACGGGACAGCUGAUGAUUCCACAAAUCCGAGCAUCCGGAUGGGGAAUAUGUACAUACAUACAAAUAACAUGUUUCUUACAGAAAU
.....................................(..(((.......(((((....(((((......)))))..))))).((((......)))).......)))..).......... ( -18.30)
>DroEre_CAF1 11306 104 - 1
UUAACUUAAUCCUGUAACUUAAUCGUUUCUUGGAAACGGGACAGCUGAUGAUUCCACAAAUCCGAGAAUACGGAUGGGGAAUA----------------UAACAUUUUUCUUACAGAAAU
...........((((((....(((((((((((....))))).))).))).(((((....(((((......)))))..))))).----------------...........)))))).... ( -26.20)
>DroYak_CAF1 11206 104 - 1
UUAACUUAAUCCUGUAACUUAAUCGUUUCUUGGAAACGGGACAGCUGAUGAUUCCACAAAUCCGAGAAUCCGGAUGGAGAAUA----------------UAACAUUUUUCUUACAGAAAU
...........((((((....(((((((((((....))))).))).)))..(((((....((((......)))))))))....----------------...........)))))).... ( -23.10)
>consensus
UUAACUUAAUCCUGUAACUUAAUCGUUUCUUGGAAACGGGACAGCUGAUGAUUCCACAAAUCCGAGAAUCCGGAUGGGGAAUAUGUACAUACAUACAAAUAACAUGUUUCUUACAGAAAU
...........((((((..........(((((....))))).........(((((....(((((......)))))..)))))............................)))))).... (-15.74 = -18.14 +   2.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:12 2006