Locus 6167

Sequence ID X_DroMel_CAF1
Location 15,736,126 – 15,736,246
Length 120
Max. P 0.616032
window10045

overview

Window 5

Location 15,736,126 – 15,736,246
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.83
Mean single sequence MFE -54.77
Consensus MFE -31.65
Energy contribution -32.02
Covariance contribution 0.37
Combinations/Pair 1.23
Mean z-score -1.79
Structure conservation index 0.58
SVM decision value 0.17
SVM RNA-class probability 0.616032
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15736126 120 + 22224390
AGCUCCUUGGGUGGACGGAACCCACCAUUGCCACCAUCUACAGGUCGCCCAGCGCCAGCGAUUCCGAAUCGCCCAGGAGGUGGGGCACCACCACUACCCGGCGGUCGUCCCGGAGGAUCU
..((((...(((((.......)))))...(((.((.......((.(((...))))).(((((.....)))))...)).)))((((((((.((.......)).))).)))))))))..... ( -45.70)
>DroGri_CAF1 13785 120 + 1
GGCUCGUUGGGUGGACGCAAUCCACCAUUGCCACCGGCAACUGGACGCCCAGCGCCAGCAAUACCCAGCCGCCCAGGAGGUGGUGCACCACCGCUACCAGGCGGUCGGCCAGGCGGCGCC
(((..((((((((((.....))).((((((((...))))).)))..)))))))(((.((.....((.((((((..((.(((((((...))))))).)).)))))).))....)))))))) ( -60.00)
>DroEre_CAF1 9083 120 + 1
AGCUCCUUGGGUGGACGGAACCCACCAUUGCCACCAGCAACAGGGCGCCCAGCGCCAGCGAUUCCGAAUCGCCCAGGAGGUGGGGCACCACCACUACCCGGCGGUCGUCCCGGAGGAGCU
((((((((.(((((.......)))))...(((.((........(((((...))))).(((((.....)))))...)).)))((((((((.((.......)).))).))))).)))))))) ( -55.30)
>DroWil_CAF1 16840 120 + 1
GGCUCUUUGGGUGGACGAAAUCCACCAUUGCCACCGGCAACUGGUCGCCCAGCACCAGCAAUUCCAAGUCGUCCUGGAGGCGGAGCACCUCCACUACCUGGCGGUCGGCCAGGUGGUGCU
.(((((...((((((.....))))))...(((........(((((.((...)))))))....((((........)))))))))))).....(((((((((((.....))))))))))).. ( -52.50)
>DroMoj_CAF1 14130 120 + 1
GGCUCGUUGGGUGGCCGUAAUCCACCUUUGCCACCGGCAACGGGUCGUCCAGCGCCCGCUAUUCCCAGCCGCCCAGGAGGCGGUGCUCCGCCCCUGCCUGGCGGCCGGCCUGGCGGCGCG
(((((((((((((((..............))))))..))))))))).....(((((.((((...((.((((((((((.(((((....)))))))))...)))))).))..))))))))). ( -69.64)
>DroAna_CAF1 103551 120 + 1
AGCAACAUAGGAGGACGAAACCCCCCGUUGCCUCCAUCUACAGGUCGCCCAGCUCCAGCGAUUCCGAAUCGUCCAGGAGGUGGAGCCCCACCUCUUCCUGGAAGUCGCCCAGUAGGUGCG
.((......((((((((........)))..)))))((((((.((((((.........)))))).(((....((((((((((((....)))))...)))))))..)))....)))))))). ( -45.50)
>consensus
AGCUCCUUGGGUGGACGAAACCCACCAUUGCCACCAGCAACAGGUCGCCCAGCGCCAGCGAUUCCGAAUCGCCCAGGAGGUGGAGCACCACCACUACCUGGCGGUCGGCCAGGAGGAGCU
.((......(((((.......)))))...(((.((.......((.(((...)))))...........((((((..((.(((((....))))).))....))))))......)).))))). (-31.65 = -32.02 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:12 2006