Locus 6164

Sequence ID X_DroMel_CAF1
Location 15,729,016 – 15,729,136
Length 120
Max. P 0.531003
window10040

overview

Window 0

Location 15,729,016 – 15,729,136
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 83.06
Mean single sequence MFE -40.68
Consensus MFE -29.04
Energy contribution -28.60
Covariance contribution -0.44
Combinations/Pair 1.37
Mean z-score -1.55
Structure conservation index 0.71
SVM decision value -0.01
SVM RNA-class probability 0.531003
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15729016 120 - 22224390
GGUUCGCACACCCUGUGGAUCCACCUCCUUGGCCAGCUUGAGGGCAUCCGAAUUGGCCAGAUCCGUAUUGGCCGGGGUCACAGCCAAAAUUAAACAAGUCUCUUUGCGAAUAAAUUGGAA
.(((((((........(((((........(((((((.(((........))).))))))))))))...(((((.(......).))))).................)))))))......... ( -33.10)
>DroVir_CAF1 5454 120 - 1
CGUGCGUACGCCCUGGGGAUCCACCUCUUUGGCCAGCUUGAGUGCGUCCGAAUUGGCCAGAUCGGUAUUGGCCGGCGUUACGGCCAAUAUCAGACAGGUCUCCUUGCGUAUAAAUUGGAA
.....((((((...(((((((......(((((((((.(((........))).)))))))))..(((((((((((......))))))))))).....)))))))..))))))......... ( -51.70)
>DroGri_CAF1 5325 120 - 1
GGUACGCACACCCUGCGGAUCAACCUCCUUGGCCAGCUUCAGGGCAUCCGAAUUGGCCAGAUCUGUGUUGGCCGGCGUUACGGCCAGAAUCAGACAGGUCUCCUUGCGUAUAAAUUGGAA
.(((((((...((((.(((......)))((((((((.(((.((....))))))))))))).((((..(((((((......)))))))...))))))))......)))))))......... ( -46.30)
>DroWil_CAF1 8681 120 - 1
UGUGCGCACACCCUGCGGAUCGACCUCUUUGGCCAACUUGAGGGCAUCCGAAUUGGCCAAAUCGGUAUUGGCCGGUGUCACAGCCAAUAUCAGGCAUGUCUCCUUGCGUAUAAAUUGGAA
((((((((((((..((.(((..(((..(((((((((.(((........))).)))))))))..)))))).)).))))).((((((.......))).)))......)))))))........ ( -41.90)
>DroMoj_CAF1 5552 120 - 1
UGUUCGCACACCCUGCGGAUCCACCUCCUUGGCCAGCUUCAGGGCAUCCGAGUUGGCCAGAUCGGUAUUGGCCGGCGUUACGGCCAGUAUAAGGCAAGUGUCCUUGCGUAUAAAUUGCAA
.(((((((.....)))))))..(((...(((((((((((..((....)))))))))))))...)))((((((((......)))))))).....(((((....)))))(((.....))).. ( -47.20)
>DroAna_CAF1 10885 120 - 1
GGUACGCACUCCUUGAGGAUCCACCUCUUUCGCUAGUUUCAACGCAUCUGAAUUAGCUAAAUCCGUAUUUGCUGGUGUAACGGCAAGUAUUAAACAUGUCUCUUUUCGAAUAAACUGAAA
((........))..((((.....)))).((((((((((.((.......))))))))).......((((((((((......)))))))))).................))).......... ( -23.90)
>consensus
GGUACGCACACCCUGCGGAUCCACCUCCUUGGCCAGCUUCAGGGCAUCCGAAUUGGCCAGAUCGGUAUUGGCCGGCGUUACGGCCAAUAUCAGACAAGUCUCCUUGCGUAUAAAUUGGAA
.(((((((........(((......)))((((((((.....((....))...))))))))....((((((((((......))))))))))..............)))))))......... (-29.04 = -28.60 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:07 2006