Locus 6163

Sequence ID X_DroMel_CAF1
Location 15,725,961 – 15,726,056
Length 95
Max. P 0.919108
window10039

overview

Window 9

Location 15,725,961 – 15,726,056
Length 95
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 74.72
Mean single sequence MFE -29.92
Consensus MFE -16.34
Energy contribution -17.94
Covariance contribution 1.60
Combinations/Pair 1.21
Mean z-score -2.00
Structure conservation index 0.55
SVM decision value 1.13
SVM RNA-class probability 0.919108
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15725961 95 - 22224390
UGGGUGAAUCACUCG----------CGAUACAUCGAUAUAUCGAAUAGUUUCCGUAUGCCGAAGCU-AAGUGUUGGUUUCGAUAACAA--GU------------CCAGUGCUUUAUCCGA
.(((((((.((((..----------((((((.((((....)))).(((((((.(....).))))))-).))))))(((.....)))..--..------------..)))).))))))).. ( -26.90)
>DroSec_CAF1 9388 96 - 1
UGGGUGAAUCACUCG----------CGAUACAUCGAUAUAUCGAAUAGCUUCCGUAUGCCGAAGCUUAAGUGUUGGUUUCGAUAACAA--GU------------CAAGUGCUUUAUCCGA
.(((((((.((((..----------((((((.((((....))))..((((((.(....).))))))...)))))).....(((.....--))------------).)))).))))))).. ( -27.90)
>DroSim_CAF1 9339 96 - 1
UGGGUGAAUCACUCG----------CGAUACAUCGAUAUAUCGAAUAGCUUCCGUAUGCCGAAGCUUAAGUGUUGGUUUCGAUAACAA--GU------------CAAGUGCUUUAUCCGC
.(((((((.((((..----------((((((.((((....))))..((((((.(....).))))))...)))))).....(((.....--))------------).)))).))))))).. ( -27.90)
>DroEre_CAF1 10029 95 - 1
UGGGUGAAACACUCG----------CGAUACAUCGAUAUAUCGAUUCG-UUCAAUAGGCCGAAACU-AAGUAUUGGUUUCGAUACUACUCGUAAGGUU-------------UGCAUCCGC
.(((((((((.((..----------(((...(((((....)))))...-.....(((..(((((((-(.....))))))))...))).)))..)))))-------------).))))).. ( -28.10)
>DroYak_CAF1 8980 118 - 1
UGGGUAAAUCACUCGCCACUCGCGGCGAUACAUCGAUAUAUCGAAUAG-UUCGAUAUGCCAAAGCU-UAGUGCUGAGCUUAAUACUUAUCGUGAGGUGUUGGCGCCAGUGCUGAAUCCGC
.((((.......(((.((((.(((.((((((..(((((((((((....-.)))))).....(((((-((....)))))))......)))))....)))))).))).)))).))))))).. ( -38.81)
>consensus
UGGGUGAAUCACUCG__________CGAUACAUCGAUAUAUCGAAUAG_UUCCGUAUGCCGAAGCU_AAGUGUUGGUUUCGAUAACAA__GU____________CAAGUGCUUUAUCCGC
.(((((((.((((............((((((.((((....))))...(((((........)))))....))))))(((.....)))....................)))).))))))).. (-16.34 = -17.94 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:06 2006