Locus 6162

Sequence ID X_DroMel_CAF1
Location 15,725,007 – 15,725,127
Length 120
Max. P 0.855861
window10038

overview

Window 8

Location 15,725,007 – 15,725,127
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.00
Mean single sequence MFE -40.60
Consensus MFE -36.36
Energy contribution -37.60
Covariance contribution 1.24
Combinations/Pair 1.03
Mean z-score -1.37
Structure conservation index 0.90
SVM decision value 0.81
SVM RNA-class probability 0.855861
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15725007 120 + 22224390
AGCGACUUCUCCCGCAUCAAUGUCUAUUGGAUGGGCAAGGAUGGCGGGGAGAACCAAGAGCUCGAGAACACAUUGAAUCGCAUGAGCGGCAAACUGCAGCACGAGCUAUCGCAGCUCCAU
.((((.((((((((((((..(((((((...)))))))..))).)).))))))).....((((((..............(((....)))((.....))....)))))).))))........ ( -41.60)
>DroSec_CAF1 8438 120 + 1
AGCGACUUCUCCCGCAUCAAUGUCUAUUGGAUGGGCAAGGAUGGCGGGGAGAACCAAGAGCUCGAAAACACAUUGAACCGCAUGAGCGGCAGACUGCAGCACGAAUUGUCGCAGUUGCAU
.((...((((((((((((..(((((((...)))))))..))).)).)))))))........................((((....))))..((((((.(((.....))).)))))))).. ( -39.00)
>DroSim_CAF1 8391 120 + 1
AGCGACUUCUCCCGCAUCAAUGUCUAUUGGAUGGGCAAGGAUGGCGGGGAGAACCAAGAGCUCGAGAACACAUUGAACCGCAUGAGCGGCAGACUGCAGCACGAGCUGUCGCAGCUGCAU
.(((((((((((((((((..(((((((...)))))))..))).)).))))))).....((((((.(..((..(((..((((....)))))))..))...).)))))))))))........ ( -45.60)
>DroEre_CAF1 9099 120 + 1
AGCGACUUCUCCCGGAUCAAUGUCUAUUGGAUGGGCAAGGAUGGCGGGGAAAACCAAGAGCUAGAGGACACAUUGAAUCGCAUUAGCGGCAGACUGCAACACGAGCUGUCGCAGCUGCAU
.((((.((((((((.(((..(((((((...)))))))..)))..)))))....((..........)).......))))))).......((((.((((.(((.....))).)))))))).. ( -36.00)
>DroYak_CAF1 8047 120 + 1
AGCGACUUCUCCCGGAUCAAUGUCUAUUGGAUGGGCAAGGAUGGUGGGGAGAACCAAGAGCUCGAGAACACAUUGAAUCGCAUGAGCGGAAGACUGCAACACGAGCUGUCGCAGCUCCAU
.((((((((((((.((((..(((((((...)))))))..)))..).))))))).....((((((......(((........))).((((....))))....)))))))))))........ ( -40.80)
>consensus
AGCGACUUCUCCCGCAUCAAUGUCUAUUGGAUGGGCAAGGAUGGCGGGGAGAACCAAGAGCUCGAGAACACAUUGAAUCGCAUGAGCGGCAGACUGCAGCACGAGCUGUCGCAGCUGCAU
.((((((((((((.((((..(((((((...)))))))..))))...))))))).....((((((..............(((....)))((.....))....)))))))))))........ (-36.36 = -37.60 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:05 2006