Locus 6157

Sequence ID X_DroMel_CAF1
Location 15,719,248 – 15,719,368
Length 120
Max. P 0.640186
window10025

overview

Window 5

Location 15,719,248 – 15,719,368
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.00
Mean single sequence MFE -44.82
Consensus MFE -41.60
Energy contribution -41.12
Covariance contribution -0.48
Combinations/Pair 1.11
Mean z-score -1.16
Structure conservation index 0.93
SVM decision value 0.22
SVM RNA-class probability 0.640186
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15719248 120 + 22224390
CCACAAUCGAGAGUUCCGUGUCGGAGUCAAAGUCACAGGCACUGGGAGCCAUCGAUACCGUCGAAACAGAUGGACAGGUGGGCUCCGAUAUGGAGACAGGUGAUGCCGGGGGAAUCGCUG
............((((((((((((((((...(((...(((.......)))...))).(((((......))))).......)))))))))))))).)).((((((.((...)).)))))). ( -43.80)
>DroSec_CAF1 2764 120 + 1
CCACAAUCGAGAGUUCCGUGUCGGAGUCAAAGUCACAGGCACUGGGAGCCAUUGAUACCGCCGAAACAGGUGGACAGGUGGGCUCCGAUAUGGAGACGGGUGAUGCCGGGGGAAUCGCUG
.......((....(((((((((((((((...((((..(((.......)))..)))).(((((......))))).......))))))))))))))).))((((((.((...)).)))))). ( -48.00)
>DroSim_CAF1 2444 120 + 1
CCACAAUCGAGAGUUCCGUGUCGGAGUCAAAGUCACAGGCACUGGGAGCCAUCGAUACCGCCGAAACAGGUGGACAGGUGGGCUCCGAUAUGGAGACGGGUGAUGCCGGGGGAAUCGCUG
.......((....(((((((((((((((...(((...(((.......)))...))).(((((......))))).......))))))))))))))).))((((((.((...)).)))))). ( -46.20)
>DroEre_CAF1 2716 120 + 1
CCACAAUCGAGAGUUCCGUGUCGGAGUCAAAGUCACAGACACUGGGAGCCAUCGAUACCGCCGAAACAGGUGGACAGGUGGGCUCCGAUGUGCUGACAGGUGAUGCCGGGGGAAUCGCUG
.......(((...((((...((((.((((..((((..(.((((.(((((((((....(((((......)))))...))).)))))).).))))))))...)))).)))))))).)))... ( -43.90)
>DroYak_CAF1 2081 120 + 1
CCACAAUCGAGAGUUCCGUAUCGGAGUCAAAGUCACAGGCACUGGGAGCCAUCGAUACCGCCGAAACAGGUAGACAGGUGGGCUCCGAUGUGGAGACGGGUGAUGCCGGUGGAAUCGCUG
((((.((((...((((((((((((((((...(((...(((.......))).....((((.........))))))).....)))))))))))))).))...))))....))))........ ( -42.20)
>consensus
CCACAAUCGAGAGUUCCGUGUCGGAGUCAAAGUCACAGGCACUGGGAGCCAUCGAUACCGCCGAAACAGGUGGACAGGUGGGCUCCGAUAUGGAGACGGGUGAUGCCGGGGGAAUCGCUG
............((((((((((((((((....((.(((...))).))..((((....(((((......)))))...))))))))))))))))).))).((((((.((...)).)))))). (-41.60 = -41.12 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:53 2006