| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,718,653 – 15,718,773 |
| Length | 120 |
| Max. P | 0.982308 |
| Location | 15,718,653 – 15,718,773 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 97.83 |
| Mean single sequence MFE | -35.56 |
| Consensus MFE | -32.56 |
| Energy contribution | -32.16 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.91 |
| SVM RNA-class probability | 0.982308 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15718653 120 - 22224390 ACCCGGCAACAAUGGGAUGAUCUAUCACAUCAACAGCGCUGGCAGCAUGGGCGAGGAUAGCAACAAUUCAAAUGGAAAUUUCACCAGCAGCAGCAAUGGCAGCAACAAUCUGCUGCCGCC .((((.......)))).((((.......))))...((((((.(.((.(((((.......))........((((....))))..))))).)))))...(((((((......))))))))). ( -33.90) >DroSec_CAF1 2145 120 - 1 ACCCGGCAACAAUGGGAUGAUCUAUCACAUCAACAGCGCUGGCAGCAUGGGCGAGGAUAGCAACAAUUCAAAUGGAAACUUCACCAGCAGCAGCAAUGGCAGCAACAAUCUGCUGCCGCC .((((.......)))).((((.......))))...((((((.(.((.(((((.......))............(....)....))))).)))))...(((((((......))))))))). ( -34.80) >DroSim_CAF1 1493 120 - 1 ACCCGGCAACAAUGGGAUGAUCUAUCACAUCAACAGCGCUGGCAGCAUGGGCGAGGAUAGCAACAACUCAAAUGGAAACUUCACCAGCAGCAGCAAUGGCAGCAACAAUCUGCUGCCGCC .((((.......)))).((((.......))))...((((((.(.((.(((..(((...........)))....(....)....))))).)))))...(((((((......))))))))). ( -35.70) >DroEre_CAF1 2115 120 - 1 ACCCGGCAACAAUGGCAUGAUCUAUCACAUCAACAGCGCUGGUAGCAUGGGCGAGGAUAGCAACAAUUCAAAUGGAAACUUCACCAGCAGCAGCAAUGGCAGCAACAAUCUGCUGCCGCC ....(((.......((.((((.......))))...((((((((.((....))((((((.......))))....(....).)))))))).)).))...(((((((......)))))))))) ( -36.10) >DroYak_CAF1 1471 120 - 1 ACCCGGCAACAAUGGCAUGAUCUAUCACAUCAACAGCGCUGGUAGCAUGGGCGAGGAUAGCAACAACUCAAAUGGAAACUUCACCAGCAGCAGCAAUGGCAGCAAUAAUCUGCUGCCGCC ....(((.......((.((((.......))))...((((((((.((....))(((...........)))....(....)...)))))).)).))...(((((((......)))))))))) ( -37.30) >consensus ACCCGGCAACAAUGGGAUGAUCUAUCACAUCAACAGCGCUGGCAGCAUGGGCGAGGAUAGCAACAAUUCAAAUGGAAACUUCACCAGCAGCAGCAAUGGCAGCAACAAUCUGCUGCCGCC ....(((.....(((..(((....)))..))).....((((.(.((.(((((.......))............(....)....))))).)))))...(((((((......)))))))))) (-32.56 = -32.16 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:47 2006