Locus 6153

Sequence ID X_DroMel_CAF1
Location 15,718,155 – 15,718,313
Length 158
Max. P 0.999378
window10013 window10014

overview

Window 3

Location 15,718,155 – 15,718,274
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.90
Mean single sequence MFE -36.59
Consensus MFE -35.32
Energy contribution -35.32
Covariance contribution 0.00
Combinations/Pair 1.06
Mean z-score -1.41
Structure conservation index 0.97
SVM decision value 1.47
SVM RNA-class probability 0.956824
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15718155 119 + 22224390
AGUCAAAGUGGACAGGCUGGUGACACGCAACGGUUGCGAUUGACCAGUAUCUAUAACCUUUGGGAUUUUCAUUUCCUCUAUACUGUAGGUACA-AGUUAGCUCGUCCAGUGCGGAUAGAC
.(((..(.(((((..((((((.(..((((.....))))..).))).(((((((((......((((........))))......))))))))).-....)))..))))).)...))).... ( -37.40)
>DroSec_CAF1 1647 118 + 1
AGUCAAAGUGGACAGGCUGGUGACACGCAACGGCUGCGAUUGACCAGUAUCUAUAACCUUUGGAAUUU-CA-UUCCUCUAUGCUGUAGGUACAAAGUUAGCUCGUCCAGUGCGGAUAGGC
.(((..(.(((((..((((((.(..((((.....))))..).))).(((((((((......(((((..-.)-)))).......)))))))))......)))..))))).)...))).... ( -36.62)
>DroSim_CAF1 995 119 + 1
AGUCAAAGUGGACAGGCUGGUGACACGCAACGGCUGCGAUUGACCAGUAUCUAUAACCUUUGGAAUUUUCAUUUCCUCUAUACUGUAGGUACA-AGUUAGCUCGUCCAGUGCGGAUAGGC
.(((..(.(((((..((((((.(..((((.....))))..).))).(((((((((......((((.......)))).......))))))))).-....)))..))))).)...))).... ( -36.92)
>DroEre_CAF1 1626 119 + 1
AGUCAAAGUGGACAGGCUGGUGACACGCAACGGUUGCGAUUGACCAGUAUCUAUAACCUUUGGGAUUUUCAUUUCCUCUAUACUAUAGGUACA-AGUUAGCUCGUCCAGUGCGGAAAGGC
..((..(.(((((..((((((.(..((((.....))))..).))).(((((((((......((((........))))......))))))))).-....)))..))))).)...))..... ( -36.00)
>DroYak_CAF1 982 119 + 1
GGUCAAAGUGGACAGGCUGGUGACACGCAACGGUUGCGAUUGACCAGUAUCUAUAACCUUUGGGAUUUUCAUUUCCUCUAUACUGUAGGUACA-AGUUAGCUCGUCCAGUGCGGAAAGUC
..((..(.(((((..((((((.(..((((.....))))..).))).(((((((((......((((........))))......))))))))).-....)))..))))).)...))..... ( -36.00)
>consensus
AGUCAAAGUGGACAGGCUGGUGACACGCAACGGUUGCGAUUGACCAGUAUCUAUAACCUUUGGGAUUUUCAUUUCCUCUAUACUGUAGGUACA_AGUUAGCUCGUCCAGUGCGGAUAGGC
.(((..(.(((((..((((((.(..((((.....))))..).))).(((((((((......((((.......)))).......)))))))))......)))..))))).)...))).... (-35.32 = -35.32 +   0.00)

alignment

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secondary structure

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dotplot

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Window 4

Location 15,718,195 – 15,718,313
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.37
Mean single sequence MFE -32.25
Consensus MFE -28.54
Energy contribution -28.54
Covariance contribution -0.00
Combinations/Pair 1.06
Mean z-score -2.60
Structure conservation index 0.89
SVM decision value 3.55
SVM RNA-class probability 0.999378
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15718195 118 + 22224390
UGACCAGUAUCUAUAACCUUUGGGAUUUUCAUUUCCUCUAUACUGUAGGUACA-AGUUAGCUCGUCCAGUGCGGAUAGACGCUUCUCCUUCCGCU-UCUGUCCCAAUUUGAUGGCAAACU
......(((((((((......((((........))))......))))))))).-((((.((.((((...((.(((((((.((..........)).-)))))))))....)))))).)))) ( -34.40)
>DroSec_CAF1 1687 118 + 1
UGACCAGUAUCUAUAACCUUUGGAAUUU-CA-UUCCUCUAUGCUGUAGGUACAAAGUUAGCUCGUCCAGUGCGGAUAGGCGCUUCUCCUUCCGCUUUCUGUCCCAAUUUGAUGGCAAACU
......(((((((((......(((((..-.)-)))).......)))))))))..((((.((.(((((((.(((((.(((.......))))))))...))).........)))))).)))) ( -31.02)
>DroSim_CAF1 1035 118 + 1
UGACCAGUAUCUAUAACCUUUGGAAUUUUCAUUUCCUCUAUACUGUAGGUACA-AGUUAGCUCGUCCAGUGCGGAUAGGCGCUUCUCCUUCCGCU-UCUGUCCCAAUUUGAUGGCAAACU
......(((((((((......((((.......)))).......))))))))).-((((.((.((((...((.(((((((.((..........)).-)))))))))....)))))).)))) ( -32.82)
>DroEre_CAF1 1666 118 + 1
UGACCAGUAUCUAUAACCUUUGGGAUUUUCAUUUCCUCUAUACUAUAGGUACA-AGUUAGCUCGUCCAGUGCGGAAAGGCGCUUUUCUUUUCGCU-UCUGUCCCAAUUUGAUGGCAAACU
......(((((((((......((((........))))......))))))))).-((((.((.(((((((.(((((((((......))))))))).-.))).........)))))).)))) ( -32.30)
>DroYak_CAF1 1022 118 + 1
UGACCAGUAUCUAUAACCUUUGGGAUUUUCAUUUCCUCUAUACUGUAGGUACA-AGUUAGCUCGUCCAGUGCGGAAAGUCGCUUCUCCUUCCGCU-UCUGUCCCAAUUUGAUGGCAAACU
......(((((((((......((((........))))......))))))))).-((((.((.(((((((.((((((.(........).)))))).-.))).........)))))).)))) ( -30.70)
>consensus
UGACCAGUAUCUAUAACCUUUGGGAUUUUCAUUUCCUCUAUACUGUAGGUACA_AGUUAGCUCGUCCAGUGCGGAUAGGCGCUUCUCCUUCCGCU_UCUGUCCCAAUUUGAUGGCAAACU
......(((((((((......((((.......)))).......)))))))))..((((.((.((((...((.((((((..((..........))...))))))))....)))))).)))) (-28.54 = -28.54 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:43 2006