Locus 6150

Sequence ID X_DroMel_CAF1
Location 15,712,516 – 15,712,610
Length 94
Max. P 0.520862
window10005

overview

Window 5

Location 15,712,516 – 15,712,610
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 76.65
Mean single sequence MFE -24.83
Consensus MFE -18.17
Energy contribution -17.70
Covariance contribution -0.47
Combinations/Pair 1.48
Mean z-score -0.84
Structure conservation index 0.73
SVM decision value -0.02
SVM RNA-class probability 0.520862
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15712516 94 - 22224390
UCUCCAUUUGGACGCUAUGUGACUCCGUUUGGAUUCACAGGGCUAACGCAUUUUGGUGGCCACUUGGACUCGUGGAGGUAAAUAAAUGAAAUUA
(((((((..(..(....(((((.(((....))).))))).(((((.((.....)).)))))....)..)..)))))))................ ( -26.70)
>DroSec_CAF1 2 75 - 1
UCUCCAUUUGGACGCUAUGUGACUCCGUUUGGAUUCACAGGGCUAACGCAUUUUGGUGGCCACUUGGACUCGUGG-------------------
..((((..(((.((((((((((.(((....))).)))))..((....))....))))).)))..)))).......------------------- ( -26.00)
>DroSim_CAF1 761 94 - 1
UCUCCAUUUGGACGCUAUGUGACUCCGUUUGGAUUCACAGGGCUAACGCAUUUUGGUGGCCACUUGGACUCGUGGAGGUAAAUAAAUGAAAUUU
(((((((..(..(....(((((.(((....))).))))).(((((.((.....)).)))))....)..)..)))))))................ ( -26.70)
>DroYak_CAF1 11887 90 - 1
UCUCCAUUUGGACGCUAUGUGACACCGUUUGGAUUCACAGGGCUAACGCAUUUCGGUGGCCACUUGGACUCGUGGAGGUAAAUAAACUAA----
(((((((..(....(((.(((.(((((((((......))))((....))....)))))..))).))).)..)))))))............---- ( -26.00)
>DroAna_CAF1 106879 94 - 1
UCGCCGUUUGGACGUUAUGUUAAUCCCUUCGGAUUUCCGGGGCUCACGCAUUUUGGUGGUCAUAUAGAUGCAUGGAGGUAAUUUAUUUAUCAUU
...((((...((.((..((..(((((....)))))..))..))))..((((((..((....))..)))))))))).(((((.....)))))... ( -18.80)
>DroPer_CAF1 225020 93 - 1
UCUCCUUUUGGACGCUAUGUAGCUCCAUUUGGGUUCACGGGUAUGACGCAUUUCGGCGGACAUAUAGACGCAUGGAGGUAAGUGAU-GUCAUGU
..........((((.(((.((.(((((..((.(((.....(((((.(((......)))..))))).))).))))))).)).))).)-))).... ( -24.80)
>consensus
UCUCCAUUUGGACGCUAUGUGACUCCGUUUGGAUUCACAGGGCUAACGCAUUUUGGUGGCCACUUGGACUCGUGGAGGUAAAUAAAUGAAAUUU
.((((((..(....((((((((.(((....))).))))).(((((.((.....)).)))))...))).)..))))))................. (-18.17 = -17.70 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:35 2006