Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,692,150 – 1,692,267 |
Length | 117 |
Max. P | 0.521289 |
Location | 1,692,150 – 1,692,267 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 87.28 |
Mean single sequence MFE | -27.72 |
Consensus MFE | -20.16 |
Energy contribution | -20.56 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.06 |
Mean z-score | -1.58 |
Structure conservation index | 0.73 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521289 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1692150 117 - 22224390 UACAUAAAUAAAAUGUGUUUAUAUGUAAAUCAGGAGCGUAGUCCCGGG-GGGAUAGACAGCAAACGUGCUGAUUUAGCGCC-AGUGUUUCAAUUUGUUUAUGCUCGAAUAUCAAAUUUA ((((((((((.....))))..))))))......((((((((((((...-))))).((.((((...((((((...)))))).-..))))))........))))))).............. ( -26.50) >DroSec_CAF1 32287 118 - 1 UACAUAAAUAAAAUGUGUUUAUAUGUAAAUCAGGAGCGUAGUCCCGGGGGGGAUAGAAAGCAAACGUGCUGAUUUAGCGCC-AGUGCUUCAGUUUGUUUAUGUUCGAAUAUCAAAUUUA .(((((((((((.((.((((...((.....)).))))...(((((....)))))...(((((...((((((...)))))).-..))))))).)))))))))))................ ( -28.70) >DroSim_CAF1 26411 118 - 1 UACAUAAAUAAAAUGUGUUUAUAUGUAAAUCAGGAGCGUAGUCCCGGGGGGGAUAGAAAGCAAACGUGCUGAUUUAGCGCC-AGUGCUUCAGUUUGUUUAUGUUCGAAUAUCAAAUUUA .(((((((((((.((.((((...((.....)).))))...(((((....)))))...(((((...((((((...)))))).-..))))))).)))))))))))................ ( -28.70) >DroEre_CAF1 28034 116 - 1 UACAUAAAUAAAAUGUGUUUAUAUGUAAAUCAGGUGCGUAGUCCCAGG-GGGAUGGAGAGCA-ACGUGCUG-UUUAGCGCCAAGUGUUUCAUUUUGUUUAUGUUUGAAUACAAAAUGUA .((((((((((((((.(((((....)))))..(((((...(((((...-)))))(((.(((.-....))).-))).)))))........))))))))))))))................ ( -31.30) >DroYak_CAF1 26164 101 - 1 UACAUAAAUAAAAUGUGUUUAUAUGUAAAUCAGGUGCGUAGUCCCAGG-GGGAUAGAGAGCA-ACGUGUU----------------UUUCAUUUUGUUUAUGUUUGAAAACAAAAUUUA .((((((((((((((.....((((((........(((.(.(((((...-))))).)...)))-)))))).----------------...))))))))))))))................ ( -23.40) >consensus UACAUAAAUAAAAUGUGUUUAUAUGUAAAUCAGGAGCGUAGUCCCGGG_GGGAUAGAAAGCAAACGUGCUGAUUUAGCGCC_AGUGUUUCAGUUUGUUUAUGUUCGAAUAUCAAAUUUA .(((((((((((.((.(((((....)))))))(((((...(((((....)))))....((((....))))...............)))))..)))))))))))................ (-20.16 = -20.56 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:29 2006