| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,711,757 – 15,711,877 |
| Length | 120 |
| Max. P | 0.966040 |
| Location | 15,711,757 – 15,711,877 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.94 |
| Mean single sequence MFE | -35.65 |
| Consensus MFE | -23.77 |
| Energy contribution | -22.50 |
| Covariance contribution | -1.27 |
| Combinations/Pair | 1.64 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.67 |
| SVM decision value | 1.59 |
| SVM RNA-class probability | 0.966040 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15711757 120 - 22224390 CUACCAUUCCUCCUCGCUGGCCGCCGCACAGGCGAGUGCAGCUGCGGCAGCGGCACACCAUCAUCAUGCCAACUUUAUGGCAGCCAGUCGACACGGCUUGCCACCGCCACCCUCGCACCU .............((((((((((((.....)))).((((.((((...)))).))))..........(((((......)))))))))).)))...(((........)))............ ( -40.50) >DroVir_CAF1 5115 114 - 1 CUAUCAUCCCCCUUCGCUCGUAACUGCUCAAGCAAAUGCAGCAGUUGUAGCUGCACA---UCAUCAUGCAAAUUUCUUAGUUGCGGGACGACAUGGGUUAC---CGCCACCAUCACACCU .........(((.((((((((((((((....))...((((((.......))))))..---..................))))))))).)))...)))....---................ ( -29.90) >DroSim_CAF1 6 119 - 1 CUACCAUUCCUCCUCGCUGGCCGCCGCACA-GCGAGUGCAGCUGCAGCAGCGGCACACCAUCAUCAUGCCAACUUCAUGGCGGCCAGUCGACACGGCUUGCCACCGCCACCCUCGCACCU .............((((((((((((((((.-....)))).(((((....)))))........................))))))))).)))...(((........)))............ ( -43.10) >DroYak_CAF1 11116 120 - 1 CUACCAUUCCUCCUCGCUGGCCGCCGCACAAGCGAACGCAGCUGCGGCAGCGGCACACCAUCAUCAUGCCAACUUCAUGGCAGCCAGUCGACAUGGAUUGCCACCUCCACCCUCACACCU ....((.(((...((((((((.(((((....((....)).((....)).)))))............(((((......)))))))))).)))...))).)).................... ( -38.40) >DroAna_CAF1 97971 117 - 1 AUAUCACUCAUCCUCAUUAGCCGUUGCUCAAGCAAAUGCGGCAGCUGCAGCGGCCCAUCAUCAUCAUGCUAAUAUUAUAGCUGCAAGUCGACAUGGUUUGCCCCCACCAC---CGCAUCU ...................((.((((((...((....)))))))).)).((((..............((((......)))).((((..(.....)..))))........)---))).... ( -26.50) >DroPer_CAF1 208131 120 - 1 CUACCAUCCGAACUCGUUGGCAGCAGUACAGGCAAAUGCAGCUGCUGCAGCCGUGCAUCACCAUCAUGCUAACUUCAUAGUGGCUGGGCGACAUGGGUUACCACCGCCAUCAUCGCAUCU ...............((((.(((((((....((....)).))))))))))).((((..((((((.(((.......))).)))).))((((...(((....))).))))......)))).. ( -35.50) >consensus CUACCAUUCCUCCUCGCUGGCCGCCGCACAAGCAAAUGCAGCUGCUGCAGCGGCACACCAUCAUCAUGCCAACUUCAUAGCAGCCAGUCGACAUGGCUUGCCACCGCCACCCUCGCACCU .............((((((((.((((.....((....)).(((((....))))).......................)))).))))).)))...(((........)))............ (-23.77 = -22.50 + -1.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:34 2006