Locus 6148

Sequence ID X_DroMel_CAF1
Location 15,710,787 – 15,710,907
Length 120
Max. P 0.536122
window10003

overview

Window 3

Location 15,710,787 – 15,710,907
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 77.84
Mean single sequence MFE -18.73
Consensus MFE -15.80
Energy contribution -15.80
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -0.86
Structure conservation index 0.84
SVM decision value 0.01
SVM RNA-class probability 0.536122
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15710787 120 - 22224390
UGAAGAAGAAGAUUACGAUACAGAUGAAGAUGAAGAUUACGAUGCAGAUGCAGAUGCAGAUGUUUGUGGCAAACAAAAAUCAAAUUAAAAGAGGUUAAGACUUCCUUAUACUUCAGACCU
(((((...(((.....(((.((........))..(.((((((.(((..(((....)))..))))))))))........))).........(((((....))))))))...)))))..... ( -19.60)
>DroSec_CAF1 21919 90 - 1
U------------------------------GAAGAUUACGAUGCAGAUGUAGAUGCAGAUGUUUGUGGCAAACAAAAAUCAAAUUAAAAGAGGUUAAGACUUCCUUAUACUUCAGACCU
(------------------------------((((.......((((........))))(((.(((((.....))))).))).........(((((....)))))......)))))..... ( -16.90)
>DroEre_CAF1 21900 93 - 1
---------------------------AGAUGUAGAUGUAGAUGCAGAUGCAGAUGCAGAUGUUUGUGGCAAACAAAAAUCAAAUUAAAAGAGGUUAAGACUUCCUUACACUUCAGACCU
---------------------------.........((((..(((....)))..))))(((.(((((.....))))).))).........(((((((((.....)))).)))))...... ( -19.70)
>consensus
U__________________________AGAUGAAGAUUACGAUGCAGAUGCAGAUGCAGAUGUUUGUGGCAAACAAAAAUCAAAUUAAAAGAGGUUAAGACUUCCUUAUACUUCAGACCU
..........................................((((........))))(((.(((((.....))))).))).........(((((((((.....)))).)))))...... (-15.80 = -15.80 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:33 2006