Locus 6147

Sequence ID X_DroMel_CAF1
Location 15,710,389 – 15,710,489
Length 100
Max. P 0.810989
window10001 window10002

overview

Window 1

Location 15,710,389 – 15,710,489
Length 100
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 100.00
Mean single sequence MFE -24.00
Consensus MFE -24.00
Energy contribution -24.00
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.47
Structure conservation index 1.00
SVM decision value 0.22
SVM RNA-class probability 0.638332
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15710389 100 + 22224390
UUAAACACGUAAUGCACAAAGGGAAUGAAGCUGUCACUGAUAUACAUAGAGUUAUGUAUCAUGUGCAUGAUAGUUUGGAUUCCAUAGGCUGCAUGUUGAU
.......((..((((((....(((((.(((((((((.((..(((((((....)))))))......))))))))))).).))))....).)))))..)).. ( -24.00)
>DroSec_CAF1 21523 100 + 1
UUAAACACGUAAUGCACAAAGGGAAUGAAGCUGUCACUGAUAUACAUAGAGUUAUGUAUCAUGUGCAUGAUAGUUUGGAUUCCAUAGGCUGCAUGUUGAU
.......((..((((((....(((((.(((((((((.((..(((((((....)))))))......))))))))))).).))))....).)))))..)).. ( -24.00)
>DroEre_CAF1 21504 100 + 1
UUAAACACGUAAUGCACAAAGGGAAUGAAGCUGUCACUGAUAUACAUAGAGUUAUGUAUCAUGUGCAUGAUAGUUUGGAUUCCAUAGGCUGCAUGUUGAU
.......((..((((((....(((((.(((((((((.((..(((((((....)))))))......))))))))))).).))))....).)))))..)).. ( -24.00)
>consensus
UUAAACACGUAAUGCACAAAGGGAAUGAAGCUGUCACUGAUAUACAUAGAGUUAUGUAUCAUGUGCAUGAUAGUUUGGAUUCCAUAGGCUGCAUGUUGAU
.......((..((((((....(((((.(((((((((.((..(((((((....)))))))......))))))))))).).))))....).)))))..)).. (-24.00 = -24.00 +   0.00)

alignment

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secondary structure

Postscript

dotplot

Postscript

Window 2

Location 15,710,389 – 15,710,489
Length 100
Sequences 3
Columns 100
Reading direction reverse
Mean pairwise identity 100.00
Mean single sequence MFE -18.70
Consensus MFE -18.70
Energy contribution -18.70
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.74
Structure conservation index 1.00
SVM decision value 0.65
SVM RNA-class probability 0.810989
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15710389 100 - 22224390
AUCAACAUGCAGCCUAUGGAAUCCAAACUAUCAUGCACAUGAUACAUAACUCUAUGUAUAUCAGUGACAGCUUCAUUCCCUUUGUGCAUUACGUGUUUAA
...((((((.......(((...))).......(((((((..(((((((....)))))))...(((((.....))))).....)))))))..))))))... ( -18.70)
>DroSec_CAF1 21523 100 - 1
AUCAACAUGCAGCCUAUGGAAUCCAAACUAUCAUGCACAUGAUACAUAACUCUAUGUAUAUCAGUGACAGCUUCAUUCCCUUUGUGCAUUACGUGUUUAA
...((((((.......(((...))).......(((((((..(((((((....)))))))...(((((.....))))).....)))))))..))))))... ( -18.70)
>DroEre_CAF1 21504 100 - 1
AUCAACAUGCAGCCUAUGGAAUCCAAACUAUCAUGCACAUGAUACAUAACUCUAUGUAUAUCAGUGACAGCUUCAUUCCCUUUGUGCAUUACGUGUUUAA
...((((((.......(((...))).......(((((((..(((((((....)))))))...(((((.....))))).....)))))))..))))))... ( -18.70)
>consensus
AUCAACAUGCAGCCUAUGGAAUCCAAACUAUCAUGCACAUGAUACAUAACUCUAUGUAUAUCAGUGACAGCUUCAUUCCCUUUGUGCAUUACGUGUUUAA
...((((((.......(((...))).......(((((((..(((((((....)))))))...(((((.....))))).....)))))))..))))))... (-18.70 = -18.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:32 2006