| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,709,967 – 15,710,065 |
| Length | 98 |
| Max. P | 0.954105 |
| Location | 15,709,967 – 15,710,065 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 73.37 |
| Mean single sequence MFE | -26.97 |
| Consensus MFE | -15.38 |
| Energy contribution | -15.17 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.57 |
| SVM decision value | 1.44 |
| SVM RNA-class probability | 0.954105 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15709967 98 - 22224390 ---------CCAUCUUUUGGGUUCCUAACCAAAUUGCAG-------------CUAAAAAGAGGCAAUUUUUUAAGCUGGCGACAAAUCAAUAAUGUCAGCAGGACAAUUAAUAUGGACAA ---------((((.((....((.(((....(((((((..-------------((....))..))))))).....(((((((............))))))))))))....)).)))).... ( -22.60) >DroSec_CAF1 21145 96 - 1 -----------AUCCUUUGGGUUCCUAACCAUAUUGCAG-------------CUAGAAAGAGGUCAUUUUUUAAGCUGGCGACAAAUCAAUAAUGUCAGCAGGACAAUCCAUAUGGACAA -----------.(((..(((((((((..........(((-------------((.((((((.....)))))).)))))((((((.........)))).))))))..)))))...)))... ( -26.90) >DroEre_CAF1 21053 119 - 1 GUGGGUGUUCCACCUUCUGGGUUCCUGACCAUAUUGCAGAGUAAAACAAUGGCAAAAAGGAUGCCAGG-CUUAAGCUGGCAACAAAUCAAUAAUGUCAGCAGGGCAAUUAAUAUGGAGAG ..(((...((((.....))))..)))..((((((((.............(((((.......))))).(-(((..(((((((............))))))).))))...)))))))).... ( -31.40) >consensus _________CCAUCUUUUGGGUUCCUAACCAUAUUGCAG_____________CUAAAAAGAGGCCAUUUUUUAAGCUGGCGACAAAUCAAUAAUGUCAGCAGGACAAUUAAUAUGGACAA .................(((....))).((((((((....................((((((....))))))..(((((((............)))))))........)))))))).... (-15.38 = -15.17 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:30 2006