| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,709,217 – 15,709,337 |
| Length | 120 |
| Max. P | 0.902806 |
| Location | 15,709,217 – 15,709,337 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 100.00 |
| Mean single sequence MFE | -21.50 |
| Consensus MFE | -21.50 |
| Energy contribution | -21.50 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.00 |
| Structure conservation index | 1.00 |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.902806 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15709217 120 + 22224390 CAAACAACUAUCACCACUUUAUGCAGCGUUCGAAUUCGCCAUUUGAAAUCCUGCGGCAAGGACAACCAUCGCCAACAUCACAUCCACAACAUUCCGGGACAUACAAUUCUGGACCACCAA ......................((((..(((((((.....)))))))...))))(((..((....))...)))...................(((((((.......)))))))....... ( -21.50) >DroSec_CAF1 20401 120 + 1 CAAACAACUAUCACCACUUUAUGCAGCGUUCGAAUUCGCCAUUUGAAAUCCUGCGGCAAGGACAACCAUCGCCAACAUCACAUCCACAACAUUCCGGGACAUACAAUUCUGGACCACCAA ......................((((..(((((((.....)))))))...))))(((..((....))...)))...................(((((((.......)))))))....... ( -21.50) >DroEre_CAF1 20304 120 + 1 CAAACAACUAUCACCACUUUAUGCAGCGUUCGAAUUCGCCAUUUGAAAUCCUGCGGCAAGGACAACCAUCGCCAACAUCACAUCCACAACAUUCCGGGACAUACAAUUCUGGACCACCAA ......................((((..(((((((.....)))))))...))))(((..((....))...)))...................(((((((.......)))))))....... ( -21.50) >consensus CAAACAACUAUCACCACUUUAUGCAGCGUUCGAAUUCGCCAUUUGAAAUCCUGCGGCAAGGACAACCAUCGCCAACAUCACAUCCACAACAUUCCGGGACAUACAAUUCUGGACCACCAA ......................((((..(((((((.....)))))))...))))(((..((....))...)))...................(((((((.......)))))))....... (-21.50 = -21.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:29 2006