Locus 6143

Sequence ID X_DroMel_CAF1
Location 15,707,340 – 15,707,460
Length 120
Max. P 0.725459
window9992

overview

Window 2

Location 15,707,340 – 15,707,460
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 95.56
Mean single sequence MFE -50.97
Consensus MFE -50.09
Energy contribution -49.77
Covariance contribution -0.33
Combinations/Pair 1.07
Mean z-score -1.60
Structure conservation index 0.98
SVM decision value 0.41
SVM RNA-class probability 0.725459
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15707340 120 + 22224390
GCACCUCGGCCGGUUCGCUUGGCGAAGUGCACGCACUGACCAAUACCGGCCGGGUGCGGCCAACGACUCUGGAGGAGGCCAUGGAGUUAUAUCAGAUCGGUCGAUUUCUGGAGCUGGAUA
(((((.((((((((....((((...((((....))))..)))).)))))))))))))..(((..(.(((..((((.((((((.((......))..)).))))..))))..)))))))... ( -52.70)
>DroSec_CAF1 18526 120 + 1
GCACCUCGGCCGGUUCGCUUGGCGAGGUGCACGCACUGACCAAUACCGGCCGGGUGCGGCCAACGACUCUGGAGGAGGCCAUGGAGCUAUAUCAGAUCGGUCGAUUUCUGGAGCUGGAUA
(((((.((((((((....((((...((((....))))..)))).)))))))))))))..(((..(.(((..((((.((((((.((......))..)).))))..))))..)))))))... ( -52.70)
>DroEre_CAF1 18426 120 + 1
GUACAUCGGCCGGUUCGCUUGGCGAAGUGCACGCGCUGACCAACACCGGCCGGGUGCGACCAACGACUCUGGAGGAGGCCAUGGAGUUAUAUCAGAUCGGUCGGUUUCUGGAGCUGGAUA
((((.(((((((((....((((...((((....))))..)))).)))))))))))))..(((..(.(((..((((.((((((.((......))..)).))))..))))..)))))))... ( -47.50)
>consensus
GCACCUCGGCCGGUUCGCUUGGCGAAGUGCACGCACUGACCAAUACCGGCCGGGUGCGGCCAACGACUCUGGAGGAGGCCAUGGAGUUAUAUCAGAUCGGUCGAUUUCUGGAGCUGGAUA
(((((.((((((((....((((...((((....))))..)))).)))))))))))))..(((..(.(((..((((.((((((.((......))..)).))))..))))..)))))))... (-50.09 = -49.77 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:23 2006