Locus 6142

Sequence ID X_DroMel_CAF1
Location 15,706,940 – 15,707,060
Length 120
Max. P 0.820208
window9991

overview

Window 1

Location 15,706,940 – 15,707,060
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 96.39
Mean single sequence MFE -44.40
Consensus MFE -43.10
Energy contribution -43.10
Covariance contribution 0.00
Combinations/Pair 1.05
Mean z-score -1.83
Structure conservation index 0.97
SVM decision value 0.68
SVM RNA-class probability 0.820208
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15706940 120 + 22224390
CGGCAAUUGGGCAAGGAUUUCGGUACACCGAAUCCAUUGGAGCACGAUCUGCGCUAUCUGCUGGAAACAGGUGAUUAUGCUGACGCAGCACUCGUCUUCACGGCAGAUGGCAGCAACGAC
..((......(((.(((((.(((....))))))))((((.....)))).)))((((((((((((((((..(((....(((....))).)))..)).))).))))))))))).))...... ( -46.20)
>DroSec_CAF1 18126 120 + 1
CGGCAAUUGGGCAAGGAUUUCGGUACUCCGAAUCCACUGGAGCACGAUCUGCGCUAUCUGCUGGAAACAGGUGAUUAUGCUGACGCAGCACUCGUCUUCACGGCAGAUGGUAGCAACGAC
((((..(..(....(((((.(((....)))))))).)..).)).))...(((((((((((((((((((..(((....(((....))).)))..)).))).))))))))))).)))..... ( -43.10)
>DroEre_CAF1 18026 120 + 1
CGGCAAUUGGGCAAGGAUUUCGGUACUCCGAAUCCGCUGGAGCACGAUCUGCGCUAUCUGCUGGAAACAGGUGAUUAUGCUGACGCAGCGCUCGUUUUCACGGCAGAUGGAAGCAACGAC
((((..((.(((..(((((.(((....))))))))))).)))).))...(((.(((((((((((((((..(((....(((....))).)))..).)))).))))))))))..)))..... ( -43.90)
>consensus
CGGCAAUUGGGCAAGGAUUUCGGUACUCCGAAUCCACUGGAGCACGAUCUGCGCUAUCUGCUGGAAACAGGUGAUUAUGCUGACGCAGCACUCGUCUUCACGGCAGAUGGAAGCAACGAC
(((((((((.((..(((((.(((....))))))))......)).)))).)))((((((((((((((((..(((....(((....))).)))..)).))).))))))))))).....)).. (-43.10 = -43.10 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:22 2006