Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,706,700 – 15,706,820 |
Length | 120 |
Max. P | 0.964538 |
Location | 15,706,700 – 15,706,820 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -36.10 |
Consensus MFE | -34.55 |
Energy contribution | -34.67 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -2.61 |
Structure conservation index | 0.96 |
SVM decision value | 1.57 |
SVM RNA-class probability | 0.964538 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15706700 120 - 22224390 CGCACCGAAACCAGGACAUCCUGCCAGCAGGUCCCGAAAAUAUACACAGCGUGCCGAUAAUAUUGCACGAUGGACUGAGAAUAUCGUUCCACGAAAGACCAGAUCACAAUCGGUGCACAA .(((((((...((((....))))......((((.((.............(((((..........))))).((((.(((.....))).))))))...)))).........))))))).... ( -36.40) >DroSec_CAF1 17886 120 - 1 CGCACCGAAACCAGGACAUCCUGCCAGCAGGUCCCGAAAAUAUACACAGCGUGCCGACAAUAUUGCACGAUGGACUGAGAAUAUCGUUCCACGAAAGACCAGAUCACAAUCGGUGCACAA .(((((((...((((....))))......((((.((.............(((((..........))))).((((.(((.....))).))))))...)))).........))))))).... ( -36.40) >DroEre_CAF1 17786 120 - 1 CGCUCCGAAACCAGGACAUCCUGCCAGCAGGUCCCGAAAAUAUACACAGCGUGCCGAUAAUAUUGCACGGUGGACUGAGAAUAUCGUUCCGCGAAAGACCAGAUCACAAUCGGUGCACAA .((.((((...((((....))))......((((................(((((..........)))))(((((.(((.....))).)))))....)))).........)))).)).... ( -35.50) >consensus CGCACCGAAACCAGGACAUCCUGCCAGCAGGUCCCGAAAAUAUACACAGCGUGCCGAUAAUAUUGCACGAUGGACUGAGAAUAUCGUUCCACGAAAGACCAGAUCACAAUCGGUGCACAA .(((((((...((((....))))......((((.((.............(((((..........))))).((((.(((.....))).))))))...)))).........))))))).... (-34.55 = -34.67 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:21 2006