Locus 6137

Sequence ID X_DroMel_CAF1
Location 15,702,455 – 15,702,575
Length 120
Max. P 0.889116
window9979

overview

Window 9

Location 15,702,455 – 15,702,575
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 97.78
Mean single sequence MFE -51.73
Consensus MFE -50.05
Energy contribution -49.83
Covariance contribution -0.22
Combinations/Pair 1.02
Mean z-score -2.06
Structure conservation index 0.97
SVM decision value 0.95
SVM RNA-class probability 0.889116
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15702455 120 - 22224390
GGUGGUGAACACGCCAGUGGACUCCACGAUGUAUUCGGCACCAGCGCUGGCCCAGUUGAUGUUGGCCGGGUCGCGUUCGCUGAAGACGGUGAUCUUCUGGCCGUUGACCACCAGGAAACC
((((((.(((..(((((.(((...(((..(((.((((((...(((((.(((((.(((......))).)))))))))).)))))).)))))).))).))))).))).)))))).(....). ( -53.50)
>DroSec_CAF1 13612 120 - 1
GGUGGUGAACACGCCAGUGGACUCCACGAUGUAUUCGGCACCAGCGCUGGCCCAGUUGAUGUUGGCCGGGUCGCGUUCGCUGAAAACGGUGAUCUUCUGGCCGUUGACCACCAGGAAACC
((((((.(((..(((((.(((...(((..(((.((((((...(((((.(((((.(((......))).)))))))))).)))))).)))))).))).))))).))).)))))).(....). ( -53.50)
>DroEre_CAF1 13361 120 - 1
GGUGGUGAACACGCCAGUGGACUCCACGAUAUAUUCGGCACCAGCGCUGGCCCAGUUGAUGUUGGUCGGGUCGCGUUCGCUGAAGACGGUGAUCUUCUGGCCGUUAACCACCAGGAAACC
((((((.(((..(((((.(((.((..((.....((((((...(((((.(((((..((......))..)))))))))).))))))..))..))))).))))).))).)))))).(....). ( -48.20)
>consensus
GGUGGUGAACACGCCAGUGGACUCCACGAUGUAUUCGGCACCAGCGCUGGCCCAGUUGAUGUUGGCCGGGUCGCGUUCGCUGAAGACGGUGAUCUUCUGGCCGUUGACCACCAGGAAACC
((((((.(((..(((((.(((.((..((.....((((((...(((((.(((((.(((......))).)))))))))).))))))..))..))))).))))).))).)))))).(....). (-50.05 = -49.83 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:12 2006