| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,701,995 – 15,702,115 |
| Length | 120 |
| Max. P | 0.594213 |
| Location | 15,701,995 – 15,702,115 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 89.97 |
| Mean single sequence MFE | -31.90 |
| Consensus MFE | -27.55 |
| Energy contribution | -27.67 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.594213 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15701995 120 - 22224390 AAAACUCGGGCGAAAAAUUGUUCAAAGUCAGAUGAAGGACGUGCAUGUCAAGCUCGAGAGCGGCUACCGCAAUAAAAAAGAGCUUUUGCUCUCAGUAACGUGAAAGCUCAAUGCUACCCA ....(((((((.........((((........)))).((((....))))..))))))).((((...)))).........(((((((..(..........)..)))))))........... ( -33.60) >DroSec_CAF1 13153 119 - 1 AAAACUCGGGCGAAAAUAUUUUCAAAGUCAGAUGAAGGACGUGCAUGUCAAGCUGGAGAGCAGCUACCGCAAUAAA-AAGAGCUUUUGCUCUCAGUAAUGUGAAAGCUCAAUGCUACCCA ....(((.(((........(((((........)))))((((....))))..))).)))((((((....))......-..(((((((..(..........)..)))))))..))))..... ( -31.90) >DroEre_CAF1 12905 119 - 1 AGAACUCGGGCGAGAAAUUUUUCAAAGUCAGUUGAAGGACGUGCAUGUCAAACUCGAGAGCAGCUAGCGCAAUAAA-AAGAGCUUUCGCGCUCAGUAACAUGAAAGCUUUAUGUUACCCA .......((.((((.....((((((......))))))((((....))))...)))).((((.((.(((.(......-..).)))...)))))).(((((((((.....))))))))))). ( -30.20) >consensus AAAACUCGGGCGAAAAAUUUUUCAAAGUCAGAUGAAGGACGUGCAUGUCAAGCUCGAGAGCAGCUACCGCAAUAAA_AAGAGCUUUUGCUCUCAGUAACGUGAAAGCUCAAUGCUACCCA ....(((((((.........((((........)))).((((....))))..)))))))((((((....)).........((((((((((..........))))))))))..))))..... (-27.55 = -27.67 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:11 2006