Locus 6134

Sequence ID X_DroMel_CAF1
Location 15,700,351 – 15,700,458
Length 107
Max. P 0.718362
window9975

overview

Window 5

Location 15,700,351 – 15,700,458
Length 107
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 85.76
Mean single sequence MFE -29.41
Consensus MFE -26.20
Energy contribution -26.07
Covariance contribution -0.13
Combinations/Pair 1.12
Mean z-score -1.53
Structure conservation index 0.89
SVM decision value 0.39
SVM RNA-class probability 0.718362
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15700351 107 - 22224390
GUGGGGUUAUUGCCUUUUAUGCUAACAUCCCAGGAUGACUUCCUAACCUAGAAACCCCAUUACAGAUAGAAGCUUCUUGACGUCACGAGCUGAAGUAGGCUAUCUAU-------------
((((((((...((.......))...((((....))))...............))))))))...((((((..(((((....((...))....)))))...))))))..------------- ( -26.60)
>DroSec_CAF1 11411 105 - 1
GUGGGGUUUUUGACUUUUAUGCCAGCAUCCCAGGAUGACUUCCUAACCUAGAAACCCCAUUACAGAUAGAAGCUUCUUGACGUCACAAGCUGAAGUAGGCUAUCU---------------
((((((((((((......(((....)))...((((.....))))....))))))))))))...((((((..(((((...............)))))...))))))--------------- ( -29.16)
>DroEre_CAF1 11138 120 - 1
GUGGGGUUAUUGGUUUUUAUGCCAACAUCCAACGAUGACUUCUUAACCUAGAAACCCCAUUACAGAUGGAAGCUUCUUGACGUCACAAGCUGAAGUAGGCUUUCCACAUAUGUACAUAUG
((((((((.(((((......)))))((((....))))...............))))))))((((..((((((((((((.(.((.....))).))).)))).)))))....))))...... ( -32.00)
>DroYak_CAF1 11240 107 - 1
GUGGGGUUAUUGGUGUUCAUGCCAACAUCCCAGGAUGACUUCCUAACCUAGAAACCCCAUUACAGAUGGAAGCUUCUUGACGUCACAAGCUGAAGUAGGCUACCCAU-------------
((((((((.(((((......)))))((((....))))...............)))))))).....((((.((((((((.(.((.....))).))).)))))..))))------------- ( -29.90)
>consensus
GUGGGGUUAUUGGCUUUUAUGCCAACAUCCCAGGAUGACUUCCUAACCUAGAAACCCCAUUACAGAUAGAAGCUUCUUGACGUCACAAGCUGAAGUAGGCUAUCCAU_____________
((((((((.(((((......)))))((((....))))...............))))))))......((((((((((((.(.((.....))).))).))))).)))).............. (-26.20 = -26.07 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:08 2006